Class Index

A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Z
  A  
NumberOfOxygen (BALL)   
AddBackboneModel (BALL::VIEW)   NumberOfPhosphorus (BALL)   
AddBallAndStickModel (BALL::VIEW)   NumberOfRotatableBonds (BALL)   
AddCartoonModel (BALL::VIEW)   NumberOfRotatableSingleBonds (BALL)   
AddHydrogenProcessor (BALL)   NumberOfSingleBonds (BALL)   
Addition (BALL)   NumberOfSulfur (BALL)   
AdditionalAtomInfo (BALL::PDB)   NumberOfTripleBonds (BALL)   
AddLineModel (BALL::VIEW)   NumericalIntegrator (BALL)   
AddSurfaceModel (BALL::VIEW)   NumericalSAS (BALL)   
AddVanDerWaalsModel (BALL::VIEW)   
  O  
AssignBondOrderProcessor::Algorithm (BALL)   Object (BALL)   
AmberBend (BALL)   ObjectCreator (BALL)   
AmberConfigurationDialog (BALL::VIEW)   OccupancyColorProcessor (BALL::VIEW)   
AmberEvaluation (BALL)   OpenBruker1DFile (BALL::VIEW)   
AmberFF (BALL)   OpenBruker2DFile (BALL::VIEW)   
AmberNonBonded (BALL)   OpenSavePreferences (BALL::VIEW)   
AmberStretch (BALL)   PDBFile::Option (BALL)   
AmberTorsion (BALL)   FDPB::Option (BALL)   
AminoAcidDescriptor (BALL::Peptides)   UhligCavFreeEnergyProcessor::Option (BALL)   
Composite::AncestorIteratorTraits (BALL)   Pair6_12InteractionEnergyProcessor::Option (BALL)   
AnimationThread (BALL::VIEW)   MMFF94::Option (BALL)   
AnisotropyShiftProcessor (BALL)   ShiftedLVMMMinimizer::Option (BALL)   
AtomOverview::ApplyProcessor (BALL::VIEW)   EnergyMinimizer::Option (BALL)   
GAFFCESParser::APSMatcher (BALL)   ConjugateGradientMinimizer::Option (BALL)   
GAFFCESParser::APSMatcher::APSTerm (BALL)   MolecularDynamics::Option (BALL)   
AromaticBondsPredicate (BALL)   CharmmFF::Option (BALL)   
AromaticityProcessor (BALL)   GAFFTypeProcessor::Option (BALL)   
CHPI::AromaticRing (BALL)   SDGenerator::Option (BALL)   
AromaticRingStacking (BALL)   NumericalSAS::Option (BALL)   
MMFF94AtomTyper::AromaticType (BALL)   AmberFF::Option (BALL)   
AssignBaseProcessor (BALL)   ReissCavFreeEnergyProcessor::Option (BALL)   
AssignBondOrderConfigurationDialog (BALL::VIEW)   GeometricFit::Option (BALL)   
AssignBondOrderProcessor (BALL)   BindingPocketProcessor::Option (BALL)   
AssignBondOrderResultsDialog (BALL::VIEW)   AssignBondOrderProcessor::Option (BALL)   
AssignChargeProcessor (BALL)   Lipophilic::Option (BALL)   
AssignRadiusProcessor (BALL)   HybridisationProcessor::Option (BALL)   
AssignShiftProcessor (BALL)   PierottiCavFreeEnergyProcessor::Option (BALL)   
AssignTypeNameProcessor (BALL)   PCMCavFreeEnergyProcessor::Option (BALL)   
AssignTypeProcessor (BALL)   PairExpRDFIntegrator::Option (BALL)   
Atom (BALL)   PairExpInteractionEnergyProcessor::Option (BALL)   
AtomBijection (BALL)   Pair6_12RDFIntegrator::Option (BALL)   
AtomBondModelBaseProcessor (BALL::VIEW)   GeneralizedBornModel::Option (BALL)   
AtomChargeColorProcessor (BALL::VIEW)   ElectrostaticPotentialCalculator::Option (BALL)   
AtomContainer (BALL)   SLICKScore::Option (BALL)   
AtomContainerIteratorTraits (BALL)   SLICKEnergy::Option (BALL)   
AtomDistanceColorProcessor (BALL::VIEW)   VanDerWaals::Option (BALL)   
Structure::AtomEntry (BALL::PDB)   RotationalEntropyLoss::Option (BALL)   
AtomicPolarizabilities (BALL)   PolarSolvation::Option (BALL)   
Kekuliser::AtomInfo (BALL)   NonpolarSolvation::Option (BALL)   
AtomInformationContent (BALL)   StrangLBFGSMinimizer::Option (BALL)   
AtomIteratorTraits (BALL)   HydrogenBond::Option (BALL)   
AtomNamePredicate (BALL)   CHPI::Option (BALL)   
HybridisationProcessor::AtomNames_ (BALL)   BuriedPolar::Option (BALL)   
AtomOverview (BALL::VIEW)   AromaticRingStacking::Option (BALL)   
MOLFile::AtomStruct (BALL)   ScoringFunction::Option (BALL)   
MOL2File::AtomStruct (BALL)   BuildBondsProcessor::Option (BALL)   
AtomTypePredicate (BALL)   SnapShotManager::Option (BALL)   
AtomTyper (BALL)   PeriodicBoundary::Option (BALL)   
AtomTypes (BALL)   RingPerceptionProcessor::Option (BALL)   
AtomVector (BALL)   SDWidget::Option (BALL::VIEW)   
Atom::AttributeVector (BALL)   AromaticityProcessor::Option (BALL)   
AutoDeletable (BALL)   Options (BALL)   
CanonicalMD::AuxFactors (BALL)   OutOfGrid (BALL::Exception)   
MicroCanonicalMD::AuxFactors (BALL)   OutOfMemory (BALL::Exception)   
AxialPredicate (BALL)   MMFF94OutOfPlaneBend::OutOfPlaneBend (BALL)   
  B  
OutOfRange (BALL::Exception)   
BackBonePredicate (BALL)   AtomOverview::OverviewProcessor (BALL::VIEW)   
BalabanIndexJ (BALL)   
  P  
BALL_DEFAULT_MUTEX_TYPE   Pair6_12InteractionEnergyProcessor (BALL)   
BALL_MAP_NAME   Pair6_12RDFIntegrator (BALL)   
BALLPlugin (BALL)   PairExpInteractionEnergyProcessor (BALL)   
BALLThread (BALL::VIEW)   PairExpRDFIntegrator (BALL)   
ServerWidget::BALLViewServer (BALL::VIEW)   Parameters (BALL)   
BaseIterator (BALL)   ParameterSection (BALL)   
MMFF94StretchBend::Bend (BALL)   ParsedFunction (BALL)   
BidirectionalIterator (BALL)   ParsedFunctionDialog (BALL::VIEW)   
binary_function (std)   PubChemDialog::ParsedResult_ (BALL::VIEW)   
BinaryFileAdaptor (BALL)   ParseError (BALL::Exception)   
BinaryFunctor (BALL)   PartialChargeBase (BALL)   
BinaryPredicate (BALL)   PartialChargeProcessor (BALL)   
BinaryProcessor (BALL)   RecordSLTBRG::PartnerAtom (BALL::PDB)   
BindingPocketProcessor (BALL)   Path (BALL)   
Bit (BALL)   RingPerceptionProcessor::PathMessage_ (BALL)   
BitVector (BALL)   PCMCavFreeEnergyProcessor (BALL)   
GAMESSDatFile::block (BALL)   PDBAtom (BALL)   
TRegularData1D::BlockValueType (BALL)   PDBAtomIteratorTraits (BALL)   
TRegularData2D::BlockValueType (BALL)   PDBFile (BALL)   
TRegularData3D::BlockValueType (BALL)   PDBInfo (BALL)   
Bond (BALL)   PDBRecords (BALL)   
MMFF94StretchParameters::BondData (BALL)   Peak (BALL)   
Atom::BondIteratorTraits (BALL)   GeometricFit::Peak_ (BALL)   
BondPolarizabilities (BALL)   PeakList (BALL)   
BondProperties (BALL::VIEW)   PeptideBuilder (BALL::Peptides)   
MOLFile::BondStruct (BALL)   PeptideDialog (BALL::VIEW)   
MOL2File::BondStruct (BALL)   PeriodicBoundary (BALL)   
BookKeeping (BALL::PDB)   PersistenceManager (BALL)   
FDPB::Boundary (BALL)   PersistentObject (BALL)   
BoundingBoxProcessor (BALL)   PiecewiseFunction (BALL)   
Box (BALL::VIEW)   PiecewisePolynomial (BALL)   
HashGrid3::BoxIteratorTraits (BALL)   PierottiCavFreeEnergyProcessor (BALL)   
HashGridBox3::BoxIteratorTraits (BALL)   PixelFormat (BALL::VIEW)   
Bruker1DFile (BALL)   CanvasWidget::PixmapItem (BALL::VIEW)   
Bruker2DFile (BALL)   PluginDialog (BALL::VIEW)   
BufferedRenderer (BALL::VIEW)   PluginHandler (BALL)   
BufferOverflow (BALL::Exception)   PluginManager (BALL)   
FragmentDB::BuildBondsProcessor (BALL)   PluginModel (BALL::VIEW)   
BuildBondsProcessor (BALL)   Point (BALL::VIEW)   
BuriedPolar (BALL)   PolarSolvation (BALL)   
ButtonEvent (BALL::VIEW)   PolarVdWSurface (BALL)   
  C  
PositionColorProcessor (BALL::VIEW)   
CalculateFDPBThread (BALL::VIEW)   PositivePolarVdWSurface (BALL)   
Camera (BALL::VIEW)   PositiveVdWSurface (BALL)   
File::CannotWrite (BALL)   Postcondition (BALL::Exception)   
CanonicalMD (BALL)   Potential1210 (BALL)   
CanvasWidget (BALL::VIEW)   POVRenderer (BALL::VIEW)   
GAFFCESParser::CESelementConnectionPredicate (BALL)   POVRenderer::POVRendererClippingPlane (BALL::VIEW)   
GAFFCESParser::CESelementPredicate (BALL)   AssignBondOrderProcessor::PQ_Entry_ (BALL)   
GAFFCESParser::CESPredicate (BALL)   PreciseTime (BALL)   
GAFFCESParser::CESwildcardsConnectionPredicate (BALL)   Precondition (BALL::Exception)   
GAFFCESParser::CESwildcardsPredicate (BALL)   Preferences (BALL::VIEW)   
Chain (BALL)   PreferencesEntry (BALL::VIEW)   
ChainBuilder (BALL)   PreferencesObject (BALL)   
ChainColorProcessor (BALL::VIEW)   PrincipalMomentOfInertia (BALL)   
ChainIteratorTraits (BALL)   PrincipalMomentOfInertiaX (BALL)   
ChainPredicate (BALL)   PrincipalMomentOfInertiaY (BALL)   
ChannelFormat (BALL::VIEW)   PrincipalMomentOfInertiaZ (BALL)   
FDPB::ChargeDistribution (BALL)   SESSingularityCleaner::ProbeIntersection (BALL)   
ChargePredicate (BALL)   RSComputer::ProbePosition (BALL)   
ChargeRuleProcessor (BALL)   Processor (BALL)   
CharmmBend (BALL)   Product (BALL)   
CharmmConfigurationDialog (BALL::VIEW)   SmartsParser::SPAtom::Property (BALL)   
CharmmEEF1 (BALL)   MOLFile::Property (BALL)   
CharmmFF (BALL)   PropertyManager (BALL)   
CharmmImproperTorsion (BALL)   SmartsParser::SPAtom::PropertyValue (BALL)   
CharmmNonBonded (BALL)   Protein (BALL)   
CharmmStretch (BALL)   ProteinIteratorTraits (BALL)   
CharmmTorsion (BALL)   ProteinPredicate (BALL)   
ChemScoreMetal (BALL)   PTE_ (BALL)   
CHPI::CHGroup (BALL)   PTEDialog (BALL::VIEW)   
Composite::ChildCompositeIteratorTraits (BALL)   PubChemDialog (BALL::VIEW)   
CHPI (BALL)   PyColorRGBAVector (BALL)   
ClaverieParameter (BALL)   PyCompositeList (BALL)   
ClearChargeProcessor (BALL)   PyDatasetVector (BALL)   
ClearRadiusProcessor (BALL)   PyIndexList (BALL)   
ClearShiftProcessor (BALL)   PyInterpreter (BALL)   
Client (BALL)   PythonHighlighter (BALL::VIEW)   
ClippingDialog (BALL::VIEW)   PythonSettings (BALL::VIEW)   
ClippingPlane (BALL::VIEW)   PyWidget (BALL::VIEW)   
ColorExtension2 (BALL::VIEW)   
  Q  
ColorHSV (BALL::VIEW)   QAbstractListModel   
ColoringSettingsDialog (BALL::VIEW)   QAbstractTableModel   
ColorMap (BALL::VIEW)   QCanvasRectangle   
ColorProcessor (BALL::VIEW)   QCanvasView   
ColorRGBA (BALL::VIEW)   QColorTable (BALL::VIEW)   
ColorUnit (BALL::VIEW)   QDialog   
ColorUnitHue (BALL::VIEW)   QDockWidget   
ComboBoxDelegate (BALL::VIEW)   QEvent   
Comparator (BALL)   QGLWidget   
DockResultDialog::Compare_ (BALL::VIEW)   QItemDelegate   
DockResult::Compare_ (BALL)   QLineEdit   
ComposedEnergyProcessor (BALL)   QMainWindow   
Composite (BALL)   QMouseEvent   
CompositeIteratorTraits (BALL)   QObject   
Composite::CompositeIteratorTraits (BALL)   QPaintDevice   
CompositeManager (BALL::VIEW)   QSyntaxHighlighter   
CompositeMessage (BALL::VIEW)   QTableView   
CompositeProperties (BALL::VIEW)   QTableWidget   
Structure::ConectAtomList (BALL::PDB)   QTextBrowser   
Conformation4C1Predicate (BALL)   QTextEdit   
ConformationSet (BALL)   QThread   
ConjugateGradientMinimizer (BALL)   QTreeWidget   
ConnectedToPredicate (BALL)   QTreeWidgetItem   
FragmentDB::BuildBondsProcessor::Connection (BALL)   QuadMesh (BALL::VIEW)   
ConnectionObject (BALL::VIEW)   QuadraticAngleBend (BALL)   
ConnectivityBase (BALL)   QuadraticBondStretch (BALL)   
Constant (BALL)   QuadraticImproperTorsion (BALL)   
ConstantFunction (BALL)   Quadruple (BALL)   
ConstBidirectionalIterator (BALL)   QuadMesh::Quadruple (BALL::VIEW)   
ConstForwardIterator (BALL)   boost::math::quaternion   
ConstRandomAccessIterator (BALL)   QWidget   
ContourSurfaceDialog (BALL::VIEW)   
  R  
ControlSelectionMessage (BALL::VIEW)   RadialDistributionFunction (BALL)   
CosineTorsion (BALL)   RadiusRuleProcessor (BALL)   
MOLFile::CountsStruct (BALL)   RandomAccessIterator (BALL)   
CreateRepresentationMessage (BALL::VIEW)   RandomCoilShiftProcessor (BALL)   
CreateSpectrumProcessor (BALL)   RandomEvaluation (BALL)   
ConnectedToPredicate::CTPNode (BALL)   RandomNumberGenerator (BALL)   
TContourSurface::Cube (BALL)   RaytraceableContourSurfaceDialog (BALL::VIEW)   
CubicFunction (BALL)   RaytraceableGrid (BALL::VIEW)   
CUDAError (BALL::Exception)   RaytraceableGridController (BALL::VIEW)   
CustomColorProcessor (BALL::VIEW)   Stage::RaytracingMaterial (BALL::VIEW)   
  D  
RDFIntegrator (BALL)   
ResidueTorsions::Data (BALL)   RDFParameter (BALL)   
QuadraticImproperTorsion::Data (BALL)   RDFSection (BALL)   
QuadraticBondStretch::Data (BALL)   ReadLockerType   
QuadraticAngleBend::Data (BALL)   ReadWriteLockType   
Potential1210::Data (BALL)   Reciprocal (BALL)   
LennardJones::Data (BALL)   ReconstructFragmentProcessor (BALL)   
CosineTorsion::Data (BALL)   RecordANISOU (BALL::PDB)   
CharmmEEF1::Data (BALL)   RecordATOM (BALL::PDB)   
HashGridBox3::DataItem (BALL)   RecordAUTHOR (BALL::PDB)   
HashGridBox3::DataIteratorTraits (BALL)   RecordCAVEAT (BALL::PDB)   
Dataset (BALL::VIEW)   RecordCISPEP (BALL::PDB)   
DatasetControl (BALL::VIEW)   RecordCOMPND (BALL::PDB)   
DatasetController (BALL::VIEW)   RecordCONECT (BALL::PDB)   
DatasetMessage (BALL::VIEW)   RecordCRYST1 (BALL::PDB)   
DCDFile (BALL)   RecordDBREF (BALL::PDB)   
PDBFile::Default (BALL)   RecordEND (BALL::PDB)   
MMFF94::Default (BALL)   RecordENDMDL (BALL::PDB)   
StrangLBFGSMinimizer::Default (BALL)   RecordEXPDTA (BALL::PDB)   
ShiftedLVMMMinimizer::Default (BALL)   RecordFORMUL (BALL::PDB)   
EnergyMinimizer::Default (BALL)   RecordFTNOTE (BALL::PDB)   
ConjugateGradientMinimizer::Default (BALL)   RecordHEADER (BALL::PDB)   
MolecularDynamics::Default (BALL)   RecordHELIX (BALL::PDB)   
SnapShotManager::Default (BALL)   RecordHET (BALL::PDB)   
PeriodicBoundary::Default (BALL)   RecordHETATM (BALL::PDB)   
CharmmFF::Default (BALL)   RecordHETNAM (BALL::PDB)   
GAFFTypeProcessor::Default (BALL)   RecordHETSYN (BALL::PDB)   
SDGenerator::Default (BALL)   RecordHYDBND (BALL::PDB)   
NumericalSAS::Default (BALL)   RecordJRNL (BALL::PDB)   
AmberFF::Default (BALL)   RecordKEYWDS (BALL::PDB)   
HybridisationProcessor::Default (BALL)   RecordLINK (BALL::PDB)   
GeometricFit::Default (BALL)   RecordMASTER (BALL::PDB)   
BuildBondsProcessor::Default (BALL)   RecordMODEL (BALL::PDB)   
BindingPocketProcessor::Default (BALL)   RecordMODRES (BALL::PDB)   
AssignBondOrderProcessor::Default (BALL)   RecordMTRIX1 (BALL::PDB)   
UhligCavFreeEnergyProcessor::Default (BALL)   RecordMTRIX2 (BALL::PDB)   
ReissCavFreeEnergyProcessor::Default (BALL)   RecordMTRIX3 (BALL::PDB)   
FDPB::Default (BALL)   RecordOBSLTE (BALL::PDB)   
PCMCavFreeEnergyProcessor::Default (BALL)   RecordORIGX1 (BALL::PDB)   
PierottiCavFreeEnergyProcessor::Default (BALL)   RecordORIGX2 (BALL::PDB)   
PairExpRDFIntegrator::Default (BALL)   RecordORIGX3 (BALL::PDB)   
PairExpInteractionEnergyProcessor::Default (BALL)   RecordREMARK (BALL::PDB)   
Pair6_12RDFIntegrator::Default (BALL)   RecordREVDAT (BALL::PDB)   
Pair6_12InteractionEnergyProcessor::Default (BALL)   RecordSCALE1 (BALL::PDB)   
GeneralizedBornModel::Default (BALL)   RecordSCALE2 (BALL::PDB)   
ElectrostaticPotentialCalculator::Default (BALL)   RecordSCALE3 (BALL::PDB)   
SLICKScore::Default (BALL)   RecordSEQADV (BALL::PDB)   
SLICKEnergy::Default (BALL)   RecordSEQRES (BALL::PDB)   
VanDerWaals::Default (BALL)   RecordSHEET (BALL::PDB)   
RotationalEntropyLoss::Default (BALL)   RecordSIGATM (BALL::PDB)   
PolarSolvation::Default (BALL)   RecordSIGUIJ (BALL::PDB)   
NonpolarSolvation::Default (BALL)   RecordSITE (BALL::PDB)   
Lipophilic::Default (BALL)   RecordSLTBRG (BALL::PDB)   
HydrogenBond::Default (BALL)   RecordSOURCE (BALL::PDB)   
CHPI::Default (BALL)   RecordSPRSDE (BALL::PDB)   
BuriedPolar::Default (BALL)   RecordSSBOND (BALL::PDB)   
AromaticRingStacking::Default (BALL)   RecordTER (BALL::PDB)   
ScoringFunction::Default (BALL)   RecordTITLE (BALL::PDB)   
SDWidget::Default (BALL::VIEW)   RecordTURN (BALL::PDB)   
RingPerceptionProcessor::Default (BALL)   RecordTVECT (BALL::PDB)   
AromaticityProcessor::Default (BALL)   RecordTypeFormat (BALL::PDB)   
DemoTutorialDialog (BALL::VIEW)   RecordUNKNOWN (BALL::PDB)   
Density (BALL)   SmartsMatcher::RecStruct_ (BALL)   
Descriptor (BALL)   SmartsMatcher::RecStructCore_ (BALL)   
DeselectControlsMessage (BALL::VIEW)   SmartsMatcher::RecStructPool_ (BALL)   
DeviceEvent (BALL::VIEW)   ReducedSurface (BALL)   
FDPB::DielectricSmoothing (BALL)   RegisterHelpSystemMessage (BALL::VIEW)   
Directory (BALL)   RegularData1DWidget (BALL::VIEW)   
Disc (BALL::VIEW)   RegularData2DWidget (BALL::VIEW)   
GLDisplayList::DisplayListRedeclaration (BALL::VIEW)   RegularData3DController (BALL::VIEW)   
DisplayProperties (BALL::VIEW)   RegularExpression (BALL)   
Division (BALL)   ReissCavFreeEnergyProcessor (BALL)   
DivisionByZero (BALL::Exception)   RelHydrophobicVdWSurface (BALL)   
DNAMutator (BALL)   RelNegativePartialCharge (BALL)   
DockableRegularData1DWidget (BALL::VIEW)   RelNegativePolarVdWSurface (BALL)   
DockableRegularData2DWidget (BALL::VIEW)   RelNegativeVdWSurface (BALL)   
DockDialog (BALL::VIEW)   RelNumberOfRotatableBonds (BALL)   
DockingAlgorithm (BALL)   RelNumberOfRotatableSingleBonds (BALL)   
DockingController (BALL::VIEW)   RelPolarVdWSurface (BALL)   
DockingFinishedMessage (BALL::VIEW)   RelPositivePartialCharge (BALL)   
DockingThread (BALL::VIEW)   RelPositivePolarVdWSurface (BALL)   
DockProgressDialog (BALL::VIEW)   RelPositiveVdWSurface (BALL)   
DockResult (BALL)   Renderer (BALL::VIEW)   
DockResultController (BALL::VIEW)   RenderSetup (BALL::VIEW)   
DockResultDialog (BALL::VIEW)   RenderTarget (BALL::VIEW)   
DockWidget (BALL::VIEW)   RenderWindow (BALL::VIEW)   
DoubleBondsPredicate (BALL)   Representation (BALL::VIEW)   
DoubleTraits (BALL)   RepresentationManager (BALL::VIEW)   
DownloadPDBFile (BALL::VIEW)   RepresentationMessage (BALL::VIEW)   
DragLogView (BALL::VIEW)   Residue (BALL::PDB)   
DSN6File (BALL)   Residue (BALL)   
  E  
ResidueChecker (BALL)   
EdgeItem (BALL)   HBondProcessor::ResidueData (BALL)   
EditableScene (BALL::VIEW)   ResidueIDPredicate (BALL)   
EditFunctions (BALL::VIEW)   ResidueIteratorTraits (BALL)   
EditableScene::EditOperation (BALL::VIEW)   ResidueNameColorProcessor (BALL::VIEW)   
EditOperationDialog (BALL::VIEW)   ResidueNumberColorProcessor (BALL::VIEW)   
EditSettings (BALL::VIEW)   ResiduePredicate (BALL)   
EditSingleShortcut (BALL::VIEW)   ResidueRotamerSet (BALL)   
EFShiftProcessor (BALL)   ResidueTorsions (BALL)   
ElectrostaticPotentialCalculator (BALL)   ResidueTypeColorProcessor (BALL::VIEW)   
Element (BALL)   Resolution (BALL::VIEW)   
ElementColorProcessor (BALL::VIEW)   ResourceEntry (BALL)   
ElementPredicate (BALL)   ResourceFile (BALL)   
HybridisationProcessor::Elements_ (BALL)   JohnsonBoveyShiftProcessor::Ring (BALL)   
Embeddable (BALL)   RingAnalyser (BALL)   
MMFF94StretchParameters::EmpiricalBondData (BALL)   RingClusterer (BALL)   
RecordDBREF::EndingDatabaseSegment (BALL::PDB)   RingFinder (BALL)   
RecordDBREF::EndingSequence (BALL::PDB)   RingAnalyser::RingInfo (BALL)   
EnergeticEvaluation (BALL)   RingPerceptionProcessor (BALL)   
EnergyMinimizer (BALL)   RMSDMinimizer (BALL)   
EnergyMinimizerThread (BALL::VIEW)   RombergIntegrator (BALL)   
EnergyProcessor (BALL)   Rotamer (BALL)   
Enumerator (BALL)   RotamerLibrary (BALL)   
EnumeratorIndex (BALL)   ResidueRotamerSet::RotamerProbabilityGreaterThan_ (BALL)   
Experiment (BALL)   RotationalEntropyLoss (BALL)   
ExportGeometryDialog (BALL::VIEW)   GeometricFit::RotationAngles_ (BALL)   
Expression (BALL)   RSComputer (BALL)   
ExpressionParser (BALL)   RSConstructor (BALL)   
ExpressionPredicate (BALL)   RSEdge (BALL)   
ExpressionTree (BALL)   RSFace (BALL)   
PreferencesEntry::ExtendedPreferencesObject (BALL::VIEW)   RSVertex (BALL)   
  F  
RuleEvaluator (BALL)   
TriangulatedSphere::Face (BALL)   RuleProcessor (BALL)   
Factory (BALL)   RunGAMESSDialog (BALL::VIEW)   
FakeDriver (BALL::VIEW)   RunPythonThread (BALL::VIEW)   
FalsePredicate (BALL)   
  S  
FDPB::FastAtomStruct (BALL)   SampleCondition (BALL)   
FDPB (BALL)   SASEdge (BALL)   
FDPBDialog (BALL::VIEW)   SASFace (BALL)   
FermiBaseFunction (BALL)   SASTriangulator (BALL)   
FetchHTMLThread (BALL::VIEW)   SASVertex (BALL)   
FieldLineCreator (BALL::VIEW)   Scene (BALL::VIEW)   
FieldLinesDialog (BALL::VIEW)   SceneMessage (BALL::VIEW)   
Ui::FieldLinesDialogData   DockResult::Scoring_ (BALL)   
File (BALL)   ScoringBaseFunction (BALL)   
FileNotFound (BALL::Exception)   ScoringComponent (BALL)   
FileObserver (BALL::VIEW)   ScoringFunction (BALL)   
FileSystem (BALL)   ScoringTypes (BALL)   
FinishedSimulationMessage (BALL::VIEW)   SCWRLRotamerFile (BALL)   
FloatTraits (BALL)   SDFile (BALL)   
ForceColorProcessor (BALL::VIEW)   SDGenerator (BALL)   
ForceField (BALL)   SDWidget (BALL::VIEW)   
ForceFieldComponent (BALL)   SecondaryStructure (BALL)   
ForceFieldEvaluation (BALL)   SecondaryStructureColorProcessor (BALL::VIEW)   
ForceFieldParameters (BALL)   SecondaryStructureIteratorTraits (BALL)   
ForceModel (BALL::VIEW)   SecondaryStructurePredicate (BALL)   
FormalCharge (BALL)   SecondaryStructureProcessor (BALL)   
FormatUnsupported (BALL::Exception)   INIFile::Section (BALL)   
ForwardIterator (BALL)   Selectable (BALL)   
Fragment (BALL)   SelectedPredicate (BALL)   
FragmentDB (BALL)   Selector (BALL)   
FragmentDistanceCollector (BALL)   ServerPreferences (BALL::VIEW)   
FragmentIteratorTraits (BALL)   ServerWidget (BALL::VIEW)   
FrameBuffer (BALL::VIEW)   SESComputer (BALL)   
FrameBufferFormat (BALL::VIEW)   SESEdge (BALL)   
FresnoTypes (BALL)   SESFace (BALL)   
  G  
SESSingularityCleaner (BALL)   
GAFFCESParser (BALL)   SESTriangulator (BALL)   
GAFFTypeProcessor (BALL)   SESVertex (BALL)   
GAMESSDatFile (BALL)   SetCamera (BALL::VIEW)   
GAMESSLogFile (BALL)   SetClippingPlane (BALL::VIEW)   
GeneralizedBornModel::GBParameters (BALL)   MOL2File::SetStruct (BALL)   
GeneralException (BALL::Exception)   ShiftedLVMMMinimizer (BALL)   
GeneralizedBornModel (BALL)   ShiftModel (BALL)   
GenericControl (BALL::VIEW)   ShiftModule (BALL)   
GenericMolFile (BALL)   ShiftReferenceElement (BALL)   
GenericSelectionMessage (BALL::VIEW)   ShiftReferenceSet (BALL)   
GeometricCenterProcessor (BALL)   ShortcutDialog (BALL::VIEW)   
GeometricControl (BALL::VIEW)   ShortcutRegistry (BALL::VIEW)   
GeometricFit (BALL)   ShortcutTableModel (BALL::VIEW)   
GeometricFitDialog (BALL::VIEW)   ShortcutTableView (BALL::VIEW)   
GeometricObject (BALL::VIEW)   ShowDisplayPropertiesMessage (BALL::VIEW)   
GeometricObjectSelectionMessage (BALL::VIEW)   ShowHelpMessage (BALL::VIEW)   
GLDisplayList (BALL::VIEW)   SimpleBase (BALL)   
GlobalExceptionHandler (BALL::Exception)   SimpleBox (BALL::VIEW)   
GlobalInitializer (BALL)   SimpleExperiment1D (BALL)   
GLOffscreenTarget (BALL::VIEW)   SimulationThread (BALL::VIEW)   
GLRenderer (BALL::VIEW)   AmberTorsion::SingleAmberTorsion (BALL)   
GLRenderWindow (BALL::VIEW)   SingleBondsPredicate (BALL)   
Gradient (BALL)   CharmmTorsion::SingleCharmmTorsion (BALL)   
GraphEdge (BALL)   CosineTorsion::SingleData (BALL)   
GraphFace (BALL)   CosineTorsion::SingleValues (BALL)   
GraphTriangle (BALL)   SizeOfSSSR (BALL)   
GraphVertex (BALL)   SizeUnderflow (BALL::Exception)   
ConnectedToPredicate::CTPNode::greater_ (BALL)   SLICKEnergy (BALL)   
GridVisualisation (BALL::VIEW)   SLICKScore (BALL)   
GridVisualizationDialog (BALL::VIEW)   SmartsMatcher (BALL)   
  H  
SmartsParser (BALL)   
HaighMallionShiftProcessor (BALL)   SMARTSPredicate (BALL)   
HashFunction (BALL)   SmilesParser (BALL)   
HashGrid3 (BALL)   SnapShot (BALL)   
HashGridBox3 (BALL)   SnapShotManager (BALL)   
HashMap (BALL)   SnapshotVisualisationDialog (BALL::VIEW)   
HashSet (BALL)   AssignBondOrderProcessor::Solution_ (BALL)   
HBondModelProcessor (BALL::VIEW)   SolventAccessibleSurface (BALL)   
HBondProcessor (BALL)   SolventAtomDescriptor (BALL)   
HBondShiftProcessor (BALL)   SolventDescriptor (BALL)   
HeadTrackingEvent (BALL::VIEW)   SolventExcludedSurface (BALL)   
HelpViewer (BALL::VIEW)   SolventParameter (BALL)   
AssignBondOrderProcessor::Heuristic (BALL)   SolventPredicate (BALL)   
HINFile (BALL)   Sp2HybridizedPredicate (BALL)   
Hotkey (BALL::VIEW)   Sp3HybridizedPredicate (BALL)   
HotkeyTable (BALL::VIEW)   SmartsParser::SPAtom (BALL)   
HybridisationProcessor (BALL)   SmilesParser::SPAtom (BALL)   
RecordHYDBND::HydrogenAtom (BALL::PDB)   SmilesParser::SPBond (BALL)   
HydrogenBond (BALL)   SmartsParser::SPBond (BALL)   
RecordHYDBND::HydrogenPartnerAtom (BALL::PDB)   Spectrum (BALL)   
HydrophobicVdWSurface (BALL)   SmartsParser::SPEdge (BALL)   
  I  
Sphere (BALL::VIEW)   
HashSet::IllegalKey (BALL)   BindingPocketProcessor::Sphere_ (BALL)   
HashMap::IllegalKey (BALL)   BindingPocketProcessor::SphereComparator_ (BALL)   
Bit::IllegalOperation (BALL)   SpHybridizedPredicate (BALL)   
IllegalPosition (BALL::Exception)   SmartsParser::SPNode (BALL)   
IllegalSelfOperation (BALL::Exception)   SquareFunction (BALL)   
IllegalTreeOperation (BALL::Exception)   Stage (BALL::VIEW)   
RMSDMinimizer::IncompatibleCoordinateSets (BALL)   StageSettings (BALL::VIEW)   
EnumeratorIndex::IncompatibleIndex (BALL)   GAFFCESParser::State (BALL)   
IncompatibleIterators (BALL::Exception)   SmartsParser::State (BALL)   
IndexOverflow (BALL::Exception)   SmilesParser::State (BALL)   
TRegularData3D::IndexType (BALL)   GAMESSDatFile::State (BALL)   
TRegularData2D::IndexType (BALL)   GAMESSLogFile::State (BALL)   
IndexUnderflow (BALL::Exception)   ExpressionParser::State (BALL)   
INIFile (BALL)   Atom::StaticAtomAttributes (BALL)   
RecordDBREF::InitialDatabaseSegment (BALL::PDB)   SteepestDescentMinimizer (BALL)   
RecordDBREF::InitialSequence (BALL::PDB)   StereoSettingsDialog (BALL::VIEW)   
InputDeviceDriver (BALL::VIEW)   STLRenderer (BALL::VIEW)   
InputDevPluginHandler (BALL::VIEW)   StrangLBFGSMinimizer (BALL)   
InputPlugin (BALL::VIEW)   streambuf (std)   
InRingPredicate (BALL)   LogStreamBuf::StreamStruct (BALL)   
InterpolateColorProcessor (BALL::VIEW)   MMFF94StretchBend::Stretch (BALL)   
InvalidArgument (BALL::Exception)   MMFF94StretchBend::StretchBend (BALL)   
Client::InvalidClient (BALL)   String (BALL)   
InvalidFormat (BALL::Exception)   StringHashMap (BALL)   
InvalidIterator (BALL::Exception)   Structure (BALL::PDB)   
InvalidOption (BALL::Exception)   StructureMapper (BALL)   
InvalidRange (BALL::Exception)   Substring (BALL)   
InvalidSize (BALL::Exception)   MOL2File::SubstructureStruct (BALL)   
Substring::InvalidSubstring (BALL)   Subtraction (BALL)   
BALL_ASIO_NAMESPACE::ip::tcp::iostream   SurfaceBase (BALL)   
HashSet::IteratorTraits (BALL)   SurfaceProcessor (BALL)   
INIFile::IteratorTraits_ (BALL)   PTE_::SymbolToElement (BALL)   
Enumerator::IteratorTraits_ (BALL)   SyncClippingPlanesMessage (BALL::VIEW)   
ResourceEntry::IteratorTraits_ (BALL)   ExpressionParser::SyntaxTree (BALL)   
  J  
System (BALL)   
JCAMPFile (BALL)   
  T  
JCAMPFile::JCAMPValue (BALL)   TAngle (BALL)   
JohnsonBoveyShiftProcessor (BALL)   TBox3 (BALL)   
  K  
TCircle3 (BALL)   
KCFFile (BALL)   TContour (BALL)   
Kekuliser (BALL)   TContourLine (BALL)   
KernelPredicate (BALL)   TContourSurface (BALL)   
  L  
TCPIOStream (BALL)   
Label (BALL::VIEW)   TCPServer (BALL)   
LabelDialog (BALL::VIEW)   TCPServerThread (BALL)   
LabelModel (BALL::VIEW)   TCPTransfer (BALL)   
LennardJones (BALL)   TemperatureFactorColorProcessor (BALL::VIEW)   
LightSettings (BALL::VIEW)   Templates (BALL)   
LightSource (BALL::VIEW)   TestFramework (BALL::VIEW)   
Limits (BALL)   TextPersistenceManager (BALL)   
Limits< bool > (BALL)   TFFT1D (BALL)   
Limits< char > (BALL)   TFFT2D (BALL)   
Limits< double > (BALL)   TFFT3D (BALL)   
Limits< float > (BALL)   TilingRenderer (BALL::VIEW)   
Limits< int > (BALL)   Timer (BALL)   
Limits< long > (BALL)   TimeStamp (BALL)   
Limits< short > (BALL)   TLine3 (BALL)   
Limits< signed char > (BALL)   TMatrix4x4 (BALL)   
Limits< unsigned char > (BALL)   TMolecularGraph (BALL)   
Limits< unsigned int > (BALL)   TMutex (BALL)   
Limits< unsigned long > (BALL)   TMutex< QMutex > (BALL)   
Limits< unsigned short > (BALL)   TMutexLocker (BALL)   
Line (BALL::VIEW)   RingPerceptionProcessor::TNode_ (BALL)   
LinearBaseFunction (BALL)   RMSDMinimizer::TooFewCoordinates (BALL)   
LineBasedFile (BALL)   TooManyBonds (BALL::Exception)   
LineSearch (BALL)   TooManyErrors (BALL::Exception)   
RecordLINK::LinkPartner (BALL::PDB)   MMFF94Torsion::Torsion (BALL)   
Lipophilic (BALL)   TotalNegativePartialCharge (BALL)   
List (BALL)   TotalPositivePartialCharge (BALL)   
LogEvent (BALL::VIEW)   TPlane3 (BALL)   
LogStreamBuf::LoglineStruct (BALL)   TQuaternion (BALL)   
LogStream (BALL)   TrajectoryController (BALL::VIEW)   
LogStreamBuf (BALL)   TrajectoryFile (BALL)   
LogStreamNotifier (BALL)   TCPTransfer::TransferFailed (BALL)   
LogView (BALL::VIEW)   TransformationEvent6D (BALL::VIEW)   
LongDoubleTraits (BALL)   TransformationManager (BALL)   
  M  
TransformationMessage (BALL::VIEW)   
MainControl (BALL::VIEW)   TransformationProcessor (BALL)   
MainControlPreferences (BALL::VIEW)   TranslationProcessor (BALL)   
Mainframe (BALL)   TReadLocker (BALL)   
MaterialSettings (BALL::VIEW)   TReadWriteLock (BALL)   
MDSimulationThread (BALL::VIEW)   TReadWriteLock< QReadWriteLock > (BALL)   
MeanAtomInformationContent (BALL)   TreeWidget (BALL::VIEW)   
Mesh (BALL::VIEW)   TRegularData1D (BALL)   
MeshBuffer (BALL::VIEW)   TRegularData2D (BALL)   
Message (BALL::VIEW)   TRegularData3D (BALL)   
MessageEvent (BALL::VIEW)   Triangle (BALL)   
HybridisationProcessor::Method (BALL)   TSurface::Triangle (BALL)   
MicroCanonicalMD (BALL)   TriangleEdge (BALL)   
MinimizationDialog (BALL::VIEW)   TrianglePoint (BALL)   
MMFF94 (BALL)   TriangulatedSAS (BALL)   
MMFF94AtomType (BALL)   TriangulatedSES (BALL)   
MMFF94AtomTypeEquivalences (BALL)   TriangulatedSphere (BALL)   
MMFF94AtomTyper (BALL)   TriangulatedSurface (BALL)   
MMFF94AtomTypes (BALL)   Triple (BALL)   
MMFF94BendParameters (BALL)   TripleBondsPredicate (BALL)   
MMFF94ChargeProcessor (BALL)   TRRFile (BALL)   
MMFF94ConfigurationDialog (BALL::VIEW)   TRRFile::TRRHeader (BALL)   
MMFF94ESParameters (BALL)   TruePredicate (BALL)   
MMFF94NonBonded (BALL)   GAFFCESParser::TruePredicate (BALL)   
MMFF94OutOfPlaneBend (BALL)   TSimpleBox3 (BALL)   
MMFF94ParametersBase (BALL)   TSphere3 (BALL)   
MMFF94PlaneParameters (BALL)   TSurface (BALL)   
MMFF94StretchBend (BALL)   Tube (BALL::VIEW)   
MMFF94StretchBendParameters (BALL)   TVector2 (BALL)   
MMFF94StretchParameters (BALL)   TVector3 (BALL)   
MMFF94Torsion (BALL)   TVector4 (BALL)   
MMFF94TorsionParameters (BALL)   TwoColoredLine (BALL::VIEW)   
MMFF94VDWParameters (BALL)   TwoColoredTube (BALL::VIEW)   
ModelInformation (BALL::VIEW)   TWriteLocker (BALL)   
AddBackboneModel::ModelPart (BALL::VIEW)   GAFFTypeProcessor::TypeDefinition (BALL)   
ModelProcessor (BALL::VIEW)   TypenameRuleProcessor (BALL)   
ModelSettingsDialog (BALL::VIEW)   TypeRuleProcessor (BALL)   
ModifyRepresentationDialog (BALL::VIEW)   
  U  
ModularWidget (BALL::VIEW)   UCK (BALL)   
MOL2File (BALL)   UhligCavFreeEnergyProcessor (BALL)   
MolecularControl (BALL::VIEW)   Ui_AmberConfigurationDialogData   
MolecularDynamics (BALL)   Ui_AssignBondOrderConfigurationDialogData   
MolecularDynamicsDialog (BALL::VIEW)   Ui_AssignBondOrderResultsDialogData   
MolecularFileDialog (BALL::VIEW)   Ui_AtomOverviewData   
MolecularInformation (BALL)   Ui_BondPropertiesData   
MolecularStructure (BALL::VIEW)   Ui_CharmmConfigurationDialogData   
MolecularTaskMessage (BALL::VIEW)   Ui_ClippingDialogData   
MolecularWeight (BALL)   Ui_ColoringSettingsDialogData   
Molecule (BALL)   Ui_CompositePropertiesData   
MoleculeAssembler (BALL)   Ui_ContourSurfaceDialogData   
MoleculeColorProcessor (BALL::VIEW)   Ui_DemoTutorialDialogData   
MoleculeIteratorTraits (BALL)   Ui_DisplayPropertiesData   
MoleculeObjectCreator (BALL)   Ui_DockDialogData   
MoleculePredicate (BALL)   Ui_DockProgressDialogData   
MOL2File::MoleculeStruct (BALL)   Ui_DockResultDialogData   
MOLFile (BALL)   Ui_DownloadPDBFileData   
MolFileFactory (BALL)   Ui_EditOperationDialogData   
MotionTrackingEvent (BALL::VIEW)   Ui_EditSettingsData   
MultiColorExtension (BALL::VIEW)   Ui_EditSingleShortcutData   
MultiLine (BALL::VIEW)   Ui_ExportGeometryDialogData   
MutableConstant (BALL)   Ui_FDPBDialogData   
MutablePower (BALL)   Ui_GeometricFitDialogData   
MutexLockerType   Ui_GridVisualizationDialogData   
TestFramework::MyEventThread (BALL::VIEW)   Ui_LabelDialogData   
PyWidget::MyLineEdit (BALL::VIEW)   Ui_LightSettingsData   
TestFramework::MyMouseEvent (BALL::VIEW)   Ui_MainControlPreferencesData   
MyTextBrowser (BALL::VIEW)   Ui_MaterialSettingsData   
PyWidget::MyTextEdit (BALL::VIEW)   Ui_MinimizationDialogData   
MolecularControl::MyTreeWidgetItem (BALL::VIEW)   Ui_MMFF94ConfigurationDialogData   
  N  
Ui_ModelSettingsDialogData   
NamedProperty (BALL)   Ui_ModifyRepresentationDialogData   
NegativePolarVdWSurface (BALL)   Ui_MolecularDynamicsDialogData   
NegativeVdWSurface (BALL)   Ui_NetworkPreferencesData   
GLDisplayList::NestedDisplayList (BALL::VIEW)   Ui_OpenSavePreferencesData   
NetworkPreferences (BALL::VIEW)   Ui_ParsedFunctionDialogData   
NewSelectionMessage (BALL::VIEW)   Ui_PeptideDialogData   
NMRAtomData (BALL)   Ui_PluginDialogData   
NMRAtomDataSet (BALL)   Ui_PreferencesData   
NMRStarFile (BALL)   Ui_PTEDialogData   
NoBufferAvailable (BALL::Exception)   Ui_PubChemDialogData   
HashSet::Node (BALL)   Ui_PythonSettingsData   
NodeItem (BALL)   Ui_RaytraceableContourSurfaceDialogData   
GLDisplayList::NoDisplayListAvailable (BALL::VIEW)   Ui_RunGAMESSDialogData   
FragmentDB::NoFragmentNode (BALL)   Ui_SetCameraData   
MMFF94NonBonded::NonBondedPairData (BALL)   Ui_SetClippingData   
NonpolarSolvation (BALL)   Ui_ShortcutDialogData   
Client::NoPersistentObject (BALL)   Ui_SnapshotVisualisationDialogData   
FragmentDB::NormalizeNamesProcessor (BALL)   Ui_StageSettingsData   
Bond::NotBound (BALL)   Ui_StereoSettingsDialogData   
ServerWidget::NotCompositeObject (BALL::VIEW)   UnaryFunctor (BALL)   
NotificationManager_ (BALL)   UnaryPredicate (BALL)   
NotificationSlot_ (BALL)   UnaryProcessor (BALL)   
NotificationSource_ (BALL)   Substring::UnboundSubstring (BALL)   
NotificationTarget (BALL)   RecordCRYST1::UnitCell (BALL::PDB)   
NotificationTarget1 (BALL)   UpdateRepresentationThread (BALL::VIEW)   
NotificationTarget2 (BALL)   
  V  
NotificationTarget_ (BALL)   CosineTorsion::Values (BALL)   
NotImplemented (BALL::Exception)   QuadraticImproperTorsion::Values (BALL)   
ColorUnit::NotInHexFormat (BALL::VIEW)   QuadraticAngleBend::Values (BALL)   
NucleicAcid (BALL)   Potential1210::Values (BALL)   
NucleicAcidIteratorTraits (BALL)   QuadraticBondStretch::Values (BALL)   
NucleicAcidPredicate (BALL)   CharmmEEF1::Values (BALL)   
Nucleotide (BALL)   LennardJones::Values (BALL)   
NucleotideIteratorTraits (BALL)   VanDerWaals (BALL)   
NucleotidePredicate (BALL)   MMFF94VDWParameters::VDWEntry (BALL)   
NullPointer (BALL::Exception)   VdWSurface (BALL)   
NumberOfAromaticAtoms (BALL)   VdWVolume (BALL)   
NumberOfAromaticBonds (BALL)   VectorGridController (BALL::VIEW)   
NumberOfAtoms (BALL)   VersionInfo (BALL)   
NumberOfBonds (BALL)   Vertex (BALL::VIEW)   
NumberOfBondsPredicate (BALL)   Vertex2 (BALL::VIEW)   
NumberOfBoron (BALL)   VertexAdjacency (BALL)   
NumberOfBromine (BALL)   VertexAdjacencyEquality (BALL)   
NumberOfCarbon (BALL)   VIEWPlugin (BALL::VIEW)   
NumberOfChlorine (BALL)   Visitor (BALL)   
NumberOfDoubleBonds (BALL)   VRMLRenderer (BALL::VIEW)   
NumberOfFlourine (BALL)   
  W  
NumberOfHeavyAtoms (BALL)   WriteLockerType   
NumberOfHeavyBonds (BALL)   GLRenderer::WrongModes (BALL::VIEW)   
NumberOfHydrogen (BALL)   
  X  
NumberOfHydrogenBondAcceptors (BALL)   XDRPersistenceManager (BALL)   
NumberOfHydrogenBondDonors (BALL)   XYZFile (BALL)   
NumberOfHydrophobicAtoms (BALL)   
  Z  
NumberOfIodine (BALL)   ZagrebIndex (BALL)   
NumberOfNitrogen (BALL)   
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