- GAFFCESatomMatcher()
: BALL::GAFFCESParser
- GAFFCESParser()
: BALL::GAFFCESParser
- GAFFTypeProcessor()
: BALL::GAFFTypeProcessor
- GAMESSDatFile()
: BALL::GAMESSDatFile
- GAMESSLogFile()
: BALL::GAMESSLogFile
- GBParameters()
: BALL::GeneralizedBornModel::GBParameters
- GeneralException()
: BALL::Exception::GeneralException
- GeneralizedBornModel()
: BALL::GeneralizedBornModel
- generateAllAngles()
: BALL::GeometricFit::RotationAngles_
- generateButtonClicked()
: BALL::VIEW::PubChemDialog
- generateFromSMILES()
: BALL::VIEW::PubChemDialog
- generateIlluminationTexture_()
: BALL::VIEW::GLRenderer
- generateListViewItem_()
: BALL::VIEW::GeometricControl
, BALL::VIEW::MolecularControl
- generateMoleculesVector()
: BALL::PeriodicBoundary
- generateSD()
: BALL::SDGenerator
- generateSomeAngles()
: BALL::GeometricFit::RotationAngles_
- GenericControl()
: BALL::VIEW::GenericControl
- GenericMolFile()
: BALL::GenericMolFile
- GenericSelectionMessage()
: BALL::VIEW::GenericSelectionMessage
- GeometricControl()
: BALL::VIEW::GeometricControl
- GeometricFit()
: BALL::GeometricFit
- GeometricFitDialog()
: BALL::VIEW::GeometricFitDialog
- GeometricObject()
: BALL::VIEW::GeometricObject
- GeometricObjectSelectionMessage()
: BALL::VIEW::GeometricObjectSelectionMessage
- get()
: BALL::TextPersistenceManager
, BALL::VIEW::ColorHSV
, BALL::XDRPersistenceManager
, BALL::VIEW::ColorHSV
, BALL::VIEW::ColorRGBA
, BALL::XDRPersistenceManager
, BALL::VIEW::ColorRGBA
, BALL::XDRPersistenceManager
, BALL::VIEW::ColorRGBA
, BALL::XDRPersistenceManager
, BALL::VIEW::ColorRGBA
, BALL::VIEW::ColorUnit
, BALL::XDRPersistenceManager
, BALL::VIEW::ColorUnit
, BALL::XDRPersistenceManager
, BALL::VIEW::ColorUnit
, BALL::XDRPersistenceManager
, BALL::VIEW::ColorUnit
, BALL::XDRPersistenceManager
, BALL::VIEW::ColorUnit
, BALL::XDRPersistenceManager
, BALL::VIEW::ColorUnit
, BALL::BitVector
, BALL::VIEW::ColorUnitHue
, BALL::HashGrid3< Item >
, BALL::VIEW::ColorUnitHue
, BALL::HashGrid3< Item >
, BALL::VIEW::ColorUnitHue
, BALL::HashSet< Key >
, BALL::VIEW::ColorUnitHue
, BALL::List< Value >
, BALL::VIEW::ColorUnitHue
, BALL::Options
, BALL::VIEW::ColorUnitHue
, BALL::VIEW::Hotkey
, BALL::Quadruple< T1, T2, T3, T4 >
, BALL::RegularExpression
, BALL::String
, BALL::StringHashMap< Value >
, BALL::Triple< T1, T2, T3 >
, BALL::ResourceEntry
, BALL::Atom
, BALL::AtomContainer
, BALL::Composite
, BALL::Chain
, BALL::Molecule
, BALL::PersistenceManager
, BALL::NucleicAcid
, BALL::Nucleotide
, BALL::PersistenceManager
, BALL::PDBAtom
, BALL::Protein
, BALL::PersistenceManager
, BALL::Residue
, BALL::SecondaryStructure
, BALL::PersistenceManager
, BALL::System
, BALL::TAngle< T >
, BALL::PersistenceManager
, BALL::TAngle< T >
, BALL::TCircle3< T >
, BALL::PersistenceManager
, BALL::TCircle3< T >
, BALL::TLine3< T >
, BALL::PersistenceManager
, BALL::TLine3< T >
, BALL::TMatrix4x4< T >
, BALL::PersistenceManager
, BALL::TMatrix4x4< T >
, BALL::PersistenceManager
, BALL::TMatrix4x4< T >
, BALL::PropertyManager
, BALL::TPlane3< T >
, BALL::Selectable
, BALL::TQuaternion< T >
, BALL::TSimpleBox3< T >
, BALL::TextPersistenceManager
, BALL::TSimpleBox3< T >
, BALL::TextPersistenceManager
, BALL::TSphere3< T >
, BALL::TextPersistenceManager
, BALL::TSurface< T >
, BALL::TVector3< T >
, BALL::TextPersistenceManager
, BALL::TVector3< T >
, BALL::TextPersistenceManager
, BALL::TVector3< T >
, BALL::TVector4< T >
, BALL::TextPersistenceManager
, BALL::TVector4< T >
, BALL::TextPersistenceManager
, BALL::SolventAccessibleSurface
, BALL::SESComputer
, BALL::TextPersistenceManager
, BALL::Directory
, BALL::VIEW::ColorHSV
- get3Prime()
: BALL::NucleicAcid
- get5Prime()
: BALL::NucleicAcid
- getabcFactors_()
: BALL::PartialChargeProcessor
- getAcidicColor()
: BALL::VIEW::ResidueTypeColorProcessor
- getActiveSitePoints()
: BALL::BindingPocketProcessor
- getAdditionalGridDistance()
: BALL::VIEW::ColorProcessor
- getAdvancedColoringOptions_()
: BALL::VIEW::DisplayProperties
- getAdvancedModelOptions_()
: BALL::VIEW::DisplayProperties
- getAlgorithmOptions()
: BALL::VIEW::DockDialog
- getAllItems_()
: BALL::VIEW::MolecularControl
- getAllSmallRings()
: BALL::RingPerceptionProcessor
- getAlpha()
: BALL::LineSearch
, BALL::VIEW::ColorRGBA
- getAlphaBlending()
: BALL::VIEW::ColorMap
- getAlternateLocationIndicator()
: BALL::PDBAtom
- getAmberConfigurationDialog()
: BALL::VIEW::MolecularStructure
- getAmberFF()
: BALL::VIEW::MolecularStructure
- getAmbientIntensity()
: BALL::VIEW::Stage
- getAncestor()
: BALL::Composite
- getAncestor_()
: BALL::VIEW::PositionColorProcessor
, BALL::VIEW::ChainColorProcessor
, BALL::VIEW::MoleculeColorProcessor
- getAngle()
: BALL::TQuaternion< T >
, BALL::TVector3< T >
, BALL::ReducedSurface
, BALL::RSEdge
, BALL::SASEdge
, BALL::VIEW::LightSource
- getAngle_()
: BALL::TVector3< T >
- getAnimationPoints()
: BALL::VIEW::Scene
- getAnimationSmoothness()
: BALL::VIEW::Scene
- getArea()
: BALL::TSurface< T >
- getArgument()
: BALL::ExpressionPredicate
- getAromaticColor()
: BALL::VIEW::ResidueTypeColorProcessor
- getAromaticRings()
: BALL::MMFF94
- getArrowWidth()
: BALL::VIEW::AddCartoonModel
- getAtom()
: BALL::AtomContainer
, BALL::Chain
, BALL::SecondaryStructure
, BALL::Peak< PositionType >
, BALL::NodeItem< Node, Edge >
, BALL::RSVertex
, BALL::SESVertex
- getAtomAreas()
: BALL::NumericalSAS
- getAtomAveraging()
: BALL::CreateSpectrumProcessor
- getAtomBranchDesignator()
: BALL::PDBFile
- getAtomByName_()
: BALL::Peptides::PeptideBuilder
- getAtomContainer()
: BALL::AtomContainer
, BALL::Chain
, BALL::Nucleotide
, BALL::Residue
, BALL::AssignBondOrderProcessor
- getAtomDescriptor()
: BALL::SolventDescriptor
- getAtomElementSymbol()
: BALL::PDBFile
- getAtomForces()
: BALL::SnapShot
- getAtomGrid()
: BALL::VIEW::ColorProcessor
- getAtomicNumber()
: BALL::Element
- getAtomicPolarizability_()
: BALL::SimpleBase
- getAtomicRadius()
: BALL::Element
- getAtomicWeight()
: BALL::Element
- getAtomIgnoring()
: BALL::CreateSpectrumProcessor
- getAtomList_()
: BALL::VIEW::AtomBondModelBaseProcessor
- getAtomName()
: BALL::PDBFile
- getAtomPairs()
: BALL::MMFF94NonBonded
- getAtomPositions()
: BALL::SnapShot
- getAtomRemotenessIndicator()
: BALL::PDBFile
- getAtoms()
: BALL::ForceField
- getAtomsDistance()
: BALL::VIEW::FieldLinesDialog
- getAtomSet_()
: BALL::VIEW::AtomBondModelBaseProcessor
- getAtomTypes()
: BALL::MMFF94
, BALL::MMFF94AtomTypes
, BALL::ForceFieldParameters
- getAtomVelocities()
: BALL::SnapShot
- getAtomVolumes()
: BALL::NumericalSAS
- getAttachmentAtom()
: BALL::DNAMutator
- getAttenuation()
: BALL::VIEW::LightSource
- getAttenuation_()
: BALL::VIEW::LightSettings
- getAttributePtr()
: BALL::Atom
- getAttributes()
: BALL::Atom
- getAttributesModificationTime()
: BALL::Atom
- getAvailableNamingStandards()
: BALL::FragmentDB
- getAxis()
: BALL::TQuaternion< T >
- getBackgroundColor()
: BALL::VIEW::Stage
- getBallAndStickStickRadius()
: BALL::VIEW::ModelSettingsDialog
- getBallRadius()
: BALL::VIEW::ModelSettingsDialog
, BALL::VIEW::AddBallAndStickModel
- getBaseDir_()
: BALL::VIEW::DemoTutorialDialog
- getBaseDirectory()
: BALL::VIEW::HelpViewer
- getBaseFunction()
: BALL::ScoringFunction
- getBaseSize()
: BALL::VIEW::ForceModel
- getBasicColor()
: BALL::VIEW::ResidueTypeColorProcessor
- getBasisOption()
: BALL::GAMESSLogFile
- getBasisSet()
: BALL::GAMESSLogFile
- getBathRelaxationTime()
: BALL::CanonicalMD
- getBendEnergy()
: BALL::AmberFF
, BALL::CharmmFF
, BALL::MMFF94
, BALL::MMFF94StretchBend
- getBends()
: BALL::MMFF94StretchBend
- getBendType()
: BALL::MMFF94StretchBend
- getBestMap_()
: BALL::FragmentDB::NormalizeNamesProcessor
- getBeta()
: BALL::LineSearch
- getBijection()
: BALL::StructureMapper
- getBit()
: BALL::BitVector
- getBitSet()
: BALL::BitVector
- getBitVector()
: BALL::PropertyManager
- getBlockedData()
: BALL::GAMESSDatFile
- getBlue()
: BALL::VIEW::ColorRGBA
- getBond()
: BALL::Atom
, BALL::EdgeItem< Node, Edge >
- getBondAtomName_()
: BALL::MolecularInformation
- getBondLength_()
: BALL::AddHydrogenProcessor
- getBondMap()
: BALL::BuildBondsProcessor
- getBondOrder()
: BALL::SmartsParser::SPBond
- getBondOrderDialog()
: BALL::VIEW::MolecularStructure
- getBondOrderResultsDialog()
: BALL::VIEW::MolecularStructure
- getBondOrderString_()
: BALL::VIEW::EditableScene
- getBondParameters()
: BALL::MMFF94StretchParameters
- getBonds()
: BALL::MMFF94
- getBondType()
: BALL::ConnectedToPredicate::CTPNode
- getBondTypeChar()
: BALL::ConnectedToPredicate::CTPNode
- getBool()
: BALL::NamedProperty
, BALL::Options
- getBorder()
: BALL::TriangulatedSurface
- getBound_()
: BALL::INIFile::IteratorTraits_
- getBoundAtom()
: BALL::Bond
- getBoundingBox()
: BALL::ReducedSurface
- getBoundingBoxX()
: BALL::TRRFile
- getBoundingBoxY()
: BALL::TRRFile
- getBoundingBoxZ()
: BALL::TRRFile
- getBoundString()
: BALL::Substring
- getBox()
: BALL::HashGrid3< Item >
, BALL::PeriodicBoundary
, BALL::BoundingBoxProcessor
- getBranchDesignator()
: BALL::PDBAtom
- getBucketSize()
: BALL::HashSet< Key >
- getBuffer()
: BALL::TCPTransfer
, BALL::VIEW::RenderTarget
, BALL::VIEW::RenderWindow< taPixelDatatype >
- getCamera()
: BALL::VIEW::Stage
- getCapacity()
: BALL::HashSet< Key >
- getCappingColor()
: BALL::VIEW::ClippingPlane
- getCarbonTypes_()
: BALL::GAFFTypeProcessor
- getCartoonArrowWidth()
: BALL::VIEW::ModelSettingsDialog
- getCartoonHelixRadius()
: BALL::VIEW::ModelSettingsDialog
- getCartoonStrandHeight()
: BALL::VIEW::ModelSettingsDialog
- getCartoonStrandWidth()
: BALL::VIEW::ModelSettingsDialog
- getCartoonTubeRadius()
: BALL::VIEW::ModelSettingsDialog
- getCAtom()
: BALL::CHPI::CHGroup
- getCenter()
: BALL::GeometricCenterProcessor
, BALL::RSFace
- getCenterOfTorus()
: BALL::RSEdge
- getCentre()
: BALL::CHPI::AromaticRing
- getChain()
: BALL::Atom
, BALL::PDBAtom
, BALL::Protein
, BALL::Residue
, BALL::SecondaryStructure
- getChainName()
: BALL::Peptides::PeptideBuilder
- getChannel()
: BALL::VIEW::PixelFormat
- getCharge()
: BALL::Atom
, BALL::Templates
- getCharmmConfigurationDialog()
: BALL::VIEW::MolecularStructure
- getCharmmFF()
: BALL::VIEW::MolecularStructure
- getChild()
: BALL::Composite
, BALL::ResourceEntry
- getChildren()
: BALL::ExpressionTree
, BALL::ConnectedToPredicate::CTPNode
- getChirality()
: BALL::SmilesParser::SPAtom
- getCHPIScore()
: BALL::SLICKEnergy
, BALL::SLICKScore
- getCircle()
: BALL::SASEdge
, BALL::SESEdge
, BALL::VIEW::Disc
- getCircleExtremum()
: BALL::RSComputer
- getCircles()
: BALL::RSComputer
- getClassAndMember_()
: BALL::VIEW::PyWidget
- getClickedItems_()
: BALL::VIEW::EditableScene
- getClippingPlane()
: BALL::VIEW::ClippingDialog
- getClippingPlanes()
: BALL::VIEW::RepresentationManager
- getClockTime()
: BALL::Timer
- getClosestIndex()
: BALL::TRegularData1D< ValueType >
, BALL::TRegularData2D< ValueType >
, BALL::TRegularData3D< ValueType >
- getClosestItem()
: BALL::HashGrid3< Item >
, BALL::VIEW::ColorProcessor
- getClosestValue()
: BALL::TRegularData1D< ValueType >
, BALL::TRegularData2D< ValueType >
, BALL::TRegularData3D< ValueType >
- getCoefficient()
: BALL::ScoringFunction
- getCoefficients()
: BALL::PiecewiseFunction
- getCoilColor()
: BALL::VIEW::SecondaryStructureColorProcessor
- getColor()
: BALL::VIEW::ContourSurfaceDialog
, BALL::VIEW::GeometricObject
, BALL::VIEW::LightSource
, BALL::VIEW::ColorProcessor
, BALL::VIEW::LabelModel
, BALL::VIEW::ElementColorProcessor
, BALL::VIEW::ResidueNumberColorProcessor
, BALL::VIEW::PositionColorProcessor
, BALL::VIEW::ResidueNameColorProcessor
, BALL::VIEW::AtomChargeColorProcessor
, BALL::VIEW::AtomDistanceColorProcessor
, BALL::VIEW::TemperatureFactorColorProcessor
, BALL::VIEW::OccupancyColorProcessor
, BALL::VIEW::ForceColorProcessor
, BALL::VIEW::SecondaryStructureColorProcessor
, BALL::VIEW::ResidueTypeColorProcessor
- getColor2()
: BALL::VIEW::ColorExtension2
- getColor_()
: BALL::VIEW::GridVisualizationDialog
, BALL::VIEW::ModifyRepresentationDialog
, BALL::VIEW::POVRenderer
- getColorIndex_()
: BALL::VIEW::POVRenderer
- getColoringMethod()
: BALL::VIEW::CreateRepresentationMessage
, BALL::VIEW::Representation
- getColoringName()
: BALL::VIEW::ModelInformation
- getColorMap()
: BALL::VIEW::ElementColorProcessor
, BALL::VIEW::ResidueNameColorProcessor
- getColorProcessor()
: BALL::VIEW::Representation
- getColors()
: BALL::VIEW::MultiColorExtension
, BALL::VIEW::QColorTable
, BALL::VIEW::ColoringSettingsDialog
, BALL::VIEW::GeometricObject
, BALL::VIEW::InterpolateColorProcessor
, BALL::VIEW::PositionColorProcessor
- getColumn()
: BALL::TMatrix4x4< T >
- getColumnIndex()
: BALL::ParameterSection
- getComent()
: BALL::XYZFile
- getComment()
: BALL::XYZFile
- getCompareMode()
: BALL::String
- getCompletionBox_()
: BALL::VIEW::PyWidget
- getComponent()
: BALL::ForceField
, BALL::ScoringFunction
- getComponentNumber()
: BALL::SmartsParser::SPNode
- getComposite()
: BALL::FragmentDistanceCollector
, BALL::VIEW::Dataset
, BALL::VIEW::GeometricObject
, BALL::VIEW::CompositeMessage
, BALL::VIEW::BALLThread
- getCompositeManager()
: BALL::VIEW::MainControl
- getCompositeName()
: BALL::VIEW::CompositeMessage
, BALL::VIEW::Representation
- getComposites()
: BALL::VIEW::CompositeManager
, BALL::VIEW::CreateRepresentationMessage
, BALL::VIEW::Representation
, BALL::VIEW::ColorProcessor
- getConfigDialog()
: BALL::VIEW::VIEWPlugin
- getConformationSet()
: BALL::DockingAlgorithm
, BALL::DockResult
, BALL::GeometricFit
, BALL::VIEW::DockingFinishedMessage
- getConjugate()
: BALL::TQuaternion< T >
- getConnectionAtom()
: BALL::DNAMutator
- getConnectivity()
: BALL::AddHydrogenProcessor
- getConstant()
: BALL::MutableConstant< DataType >
- getConstants()
: BALL::Pair6_12RDFIntegrator
, BALL::PairExpRDFIntegrator
- getContactCircle()
: BALL::RSEdge
- getContainer()
: BALL::BaseIterator< Container, DataType, Position, Traits >
, BALL::Composite::AncestorIteratorTraits
, BALL::Composite::ChildCompositeIteratorTraits
, BALL::Composite::CompositeIteratorTraits
, BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
, BALL::HashGridBox3< Item >::BoxIteratorTraits
, BALL::HashGridBox3< Item >::DataIteratorTraits
, BALL::HashGrid3< Item >::BoxIteratorTraits
, BALL::HashSet< Key >::IteratorTraits
, BALL::ResourceEntry::IteratorTraits_
, BALL::Atom::BondIteratorTraits
, BALL::CompositeIteratorTraits
- getContainers_()
: BALL::VIEW::EditableScene
- getContent()
: BALL::INIFile
, BALL::VIEW::HotkeyTable
, BALL::VIEW::PythonSettings
- getController()
: BALL::VIEW::DatasetControl
- getCoordinates()
: BALL::TContourSurface< T >::Cube
, BALL::TRegularData1D< ValueType >
, BALL::TRegularData2D< ValueType >
, BALL::TRegularData3D< ValueType >
- getCorrectionParameter()
: BALL::ShiftedLVMMMinimizer
- getCovalentRadius()
: BALL::Element
- getCPUTime()
: BALL::Timer
- getCreationMethods()
: BALL::Expression
- getCTerminal()
: BALL::Chain
, BALL::Protein
, BALL::SecondaryStructure
- getCurentModel()
: BALL::PDBInfo
- getCurrent()
: BALL::Enumerator< Container, SiteIterator, Variant >
- getCurrentLightNumber_()
: BALL::VIEW::LightSettings
- getCurrentLine()
: BALL::VIEW::PyWidget
- getCurrentModel()
: BALL::PDBFile
, BALL::PDBInfo
- getCurrentScript()
: BALL::VIEW::PyWidget
- getCurrentSnapshotNumber()
: BALL::SnapShotManager
- getCurrentWord_()
: BALL::VIEW::PyWidget
- getcwd_()
: BALL::Directory
- getData()
: BALL::Composite::AncestorIteratorTraits
, BALL::Composite::ChildCompositeIteratorTraits
, BALL::Composite::CompositeIteratorTraits
, BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
, BALL::HashGridBox3< Item >::BoxIteratorTraits
, BALL::HashGridBox3< Item >::DataIteratorTraits
, BALL::HashGrid3< Item >::BoxIteratorTraits
, BALL::HashSet< Key >::IteratorTraits
, BALL::TRegularData1D< ValueType >
, BALL::TRegularData2D< ValueType >
, BALL::TRegularData3D< ValueType >
, BALL::Bruker1DFile
, BALL::Bruker2DFile
, BALL::NMRStarFile
, BALL::ResourceEntry::IteratorTraits_
, BALL::Atom::BondIteratorTraits
, BALL::CompositeIteratorTraits
, BALL::TFFT1D< ComplexTraits >
, BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
, BALL::Spectrum< DataT, PeakT, PositionT >
, BALL::NodeItem< Node, Edge >
, BALL::EdgeItem< Node, Edge >
, BALL::BinaryFileAdaptor< T >
, BALL::VIEW::RegularData3DController
, BALL::VIEW::TrajectoryController
, BALL::VIEW::DockResultController
, BALL::VIEW::VectorGridController
, BALL::VIEW::RaytraceableGridController
, BALL::VIEW::FrameBuffer
- getDataPath()
: BALL::Path
- getDataset()
: BALL::VIEW::DatasetController
, BALL::VIEW::DatasetMessage
- getDatasetControl()
: BALL::VIEW::DatasetController
- getDatasets()
: BALL::VIEW::DatasetController
, BALL::VIEW::DatasetControl
- getDCDFile()
: BALL::VIEW::MolecularDynamicsDialog
, BALL::VIEW::SimulationThread
- getDefault()
: BALL::Factory< T >
- getDefaultColor()
: BALL::VIEW::ColorProcessor
- getDefaultDataPath()
: BALL::Path
- getDefaultNamingStandard()
: BALL::FragmentDB
- getDefaultPage()
: BALL::VIEW::HelpViewer
- getDefaultPeak()
: BALL::Experiment< PeakListType >
- getDefaultValence()
: BALL::SmartsParser::SPAtom
, BALL::SmilesParser::SPAtom
- getDegree()
: BALL::Composite
, BALL::PiecewisePolynomial
, BALL::NodeItem< Node, Edge >
- getDensity()
: BALL::SurfaceProcessor
, BALL::TriangulatedSAS
, BALL::TriangulatedSES
, BALL::TriangulatedSurface
- getDepth()
: BALL::Composite
, BALL::ResourceEntry
, BALL::ResourceEntry::IteratorTraits_
, BALL::TBox3< T >
, BALL::TSimpleBox3< T >
, BALL::UCK
- getDescription()
: BALL::BALLPlugin
, BALL::VIEW::VIEWPlugin
- getDeterminant()
: BALL::TMatrix4x4< T >
- getDevice()
: BALL::VIEW::DeviceEvent
- getDiagonal()
: BALL::TMatrix4x4< T >
- getDiagonalVector()
: BALL::TBox3< T >
- getDiffuseIntensity()
: BALL::VIEW::Stage
- getDimension()
: BALL::TRegularData1D< ValueType >
, BALL::TRegularData2D< ValueType >
, BALL::TRegularData3D< ValueType >
- getDirection()
: BALL::EnergyMinimizer
, BALL::VIEW::LightSource
- getDirection_()
: BALL::VIEW::LightSettings
- getDistance()
: BALL::Atom
, BALL::Atom::BondIteratorTraits
, BALL::TVector2< T >
, BALL::TVector3< T >
, BALL::TVector4< T >
, BALL::FragmentDistanceCollector
, BALL::VIEW::ClippingPlane
, BALL::VIEW::Camera
, BALL::VIEW::AtomDistanceColorProcessor
- getDNABaseRadius()
: BALL::VIEW::ModelSettingsDialog
, BALL::VIEW::AddCartoonModel
- getDNAHelixRadius()
: BALL::VIEW::ModelSettingsDialog
, BALL::VIEW::AddCartoonModel
- getDNALadderRadius()
: BALL::VIEW::ModelSettingsDialog
, BALL::VIEW::AddCartoonModel
- getDockDialog()
: BALL::VIEW::DockingController
- getDockingAlgorithm()
: BALL::DockResult
, BALL::VIEW::DockProgressDialog
- getDockingOptions()
: BALL::DockResult
- getDotSize()
: BALL::VIEW::GridVisualisation
- getDouble()
: BALL::NamedProperty
- getDoubleValue()
: BALL::JCAMPFile
- getDrawingMode()
: BALL::VIEW::Representation
, BALL::VIEW::GLRenderer
- getDrawingPrecision()
: BALL::VIEW::Representation
, BALL::VIEW::ModelProcessor
- getEdge()
: BALL::GraphFace< Vertex, Edge, Face >
, BALL::GraphTriangle< Vertex, Edge, Face >
, BALL::TMolecularGraph< Node, Edge >
, BALL::ReducedSurface
, BALL::SolventAccessibleSurface
- getEdges()
: BALL::GraphFace< Vertex, Edge, Face >
, BALL::GraphTriangle< Vertex, Edge, Face >
, BALL::SmartsParser
- getEditElementType()
: BALL::VIEW::EditableScene
- getEditorFont()
: BALL::VIEW::PythonSettings
- getElectronAffinity_()
: BALL::PartialChargeProcessor
- getElectronegativity()
: BALL::Element
- getElectrostaticEnergy()
: BALL::AmberNonBonded
, BALL::CharmmNonBonded
- getElement()
: BALL::Atom
, BALL::PTE_
- getElementName()
: BALL::GAFFCESParser::CESelementConnectionPredicate
, BALL::GAFFCESParser::CESelementPredicate
- getElementSymbols()
: BALL::GAFFCESParser
- getEmpiricalParameters()
: BALL::MMFF94StretchParameters
- getEnclosingIndices()
: BALL::TRegularData1D< ValueType >
, BALL::TRegularData2D< ValueType >
, BALL::TRegularData3D< ValueType >
- getEnclosingValues()
: BALL::TRegularData1D< ValueType >
, BALL::TRegularData2D< ValueType >
, BALL::TRegularData3D< ValueType >
- getEndpoint_()
: BALL::VIEW::SDWidget
- getEndSnapshot()
: BALL::VIEW::SnapshotVisualisationDialog
- getEnergy()
: BALL::EnergyProcessor
, BALL::ForceField
, BALL::ForceFieldComponent
, BALL::EnergyMinimizer
, BALL::FDPB
- getEnergyDifference()
: BALL::VIEW::MinimizationDialog
- getEnergyDifferenceBound()
: BALL::EnergyMinimizer
- getEnergyOutputFrequency()
: BALL::MolecularDynamics
, BALL::EnergyMinimizer
- getEnergyToAbort()
: BALL::MolecularDynamics
, BALL::EnergyMinimizer
- getEnergyUpdateCounter()
: BALL::EnergyMinimizer
- getEntries()
: BALL::JCAMPFile
- getEntry()
: BALL::ResourceEntry
, BALL::ResourceFile
, BALL::VIEW::ShowHelpMessage
- getEntry_()
: BALL::VIEW::ShortcutRegistry
- getEntryFor()
: BALL::VIEW::ColoringSettingsDialog
, BALL::VIEW::ModelSettingsDialog
- getEquivalence()
: BALL::MMFF94AtomTypeEquivalences
- getEquivalences()
: BALL::MMFF94
- getErrorCode()
: BALL::FDPB
, BALL::TCPTransfer
- getErrorMessage()
: BALL::FDPB
- getESEnergy()
: BALL::AmberFF
, BALL::CharmmFF
, BALL::MMFF94
, BALL::MMFF94NonBonded
- getExpandedText()
: BALL::VIEW::Label
- getExponent()
: BALL::MutablePower< Function, DataType >
- getExpression()
: BALL::Selector
, BALL::CreateSpectrumProcessor
, BALL::SimpleExperiment1D
, BALL::NumberOfHydrogenBondAcceptors
, BALL::NumberOfHydrogenBondDonors
, BALL::NumberOfHydrophobicAtoms
- getExpressionString()
: BALL::Expression
- getExpressionTree()
: BALL::Expression
- getExtensions()
: BALL::VIEW::GLRenderer
- getExternalSurface_()
: BALL::Pair6_12InteractionEnergyProcessor
, BALL::PairExpInteractionEnergyProcessor
- getExtrema()
: BALL::SESSingularityCleaner
- getEyeDistance()
: BALL::VIEW::Stage
- getFace()
: BALL::GraphEdge< Vertex, Edge, Face >
, BALL::ReducedSurface
, BALL::SolventAccessibleSurface
- getFaceNormal()
: BALL::RSComputer
- getFDPBDialog()
: BALL::VIEW::MolecularStructure
- getFDPBSolver()
: BALL::VIEW::FDPBDialog
- getField()
: BALL::String
, BALL::LineBasedFile
- getFieldQuoted()
: BALL::String
- getFile()
: BALL::Exception::GeneralException
- getFileAddress()
: BALL::TCPTransfer
- getFileName()
: BALL::VIEW::FileObserver
- getFilename()
: BALL::Exception::FileNotFound
, BALL::INIFile
, BALL::Parameters
, BALL::PDBInfo
, BALL::ShiftModel
, BALL::AssignRadiusProcessor
, BALL::FragmentDB
, BALL::File::CannotWrite
, BALL::VIEW::CharmmConfigurationDialog
, BALL::VIEW::ExportGeometryDialog
, BALL::VIEW::PythonSettings
, BALL::VIEW::FetchHTMLThread
- getFileStream()
: BALL::File
- getFileTypes_()
: BALL::VIEW::DatasetController
- getFirst()
: BALL::Addition< First, Second, DataType >
, BALL::Subtraction< First, Second, DataType >
, BALL::Product< First, Second, DataType >
, BALL::Division< First, Second, DataType >
- getFirstAtom()
: BALL::Bond
- getFirstCategoryFaces()
: BALL::SESSingularityCleaner
- getFirstChild()
: BALL::Composite
- getFirstColor()
: BALL::VIEW::ResidueNumberColorProcessor
- getFirstEdge()
: BALL::SmartsParser::SPNode
- getFirstEntry()
: BALL::Directory
- getFirstIndex()
: BALL::Substring
- getFirstMolecule()
: BALL::ScoringFunction
- getFirstSPEdge()
: BALL::SmartsParser::SPEdge
- getFirstSPNode()
: BALL::SmartsParser::SPEdge
- getFlags()
: BALL::VIEW::PixelFormat
- getFloat()
: BALL::NamedProperty
- getFloatValue_()
: BALL::VIEW::ModelSettingsDialog
- getFlushToDiskFrequency()
: BALL::SnapShotManager
- getFocalDistance()
: BALL::VIEW::Stage
- getFogIntensity()
: BALL::VIEW::Stage
- getFont()
: BALL::VIEW::MainControlPreferences
, BALL::VIEW::LabelModel
, BALL::VIEW::Label
- getForce()
: BALL::Atom
- getForceBase()
: BALL::VIEW::ModelSettingsDialog
- getForceField()
: BALL::ForceFieldComponent
, BALL::SnapShotManager
, BALL::MolecularDynamics
, BALL::EnergyMinimizer
, BALL::AmberEvaluation
, BALL::ForceFieldEvaluation
, BALL::VIEW::MolecularStructure
- getForceMaxLength()
: BALL::VIEW::ModelSettingsDialog
- getForceOffset()
: BALL::VIEW::ModelSettingsDialog
- getForceScaling()
: BALL::VIEW::ModelSettingsDialog
- getForceUpdateCounter()
: BALL::EnergyMinimizer
- getFormalCharge()
: BALL::Atom
, BALL::SmilesParser::SPAtom
- getFormat()
: BALL::VIEW::FrameBuffer
, BALL::VIEW::RenderTarget
, BALL::VIEW::RenderWindow< taPixelDatatype >
- getFormula()
: BALL::UCK
- getFourierSpaceMax()
: BALL::TFFT1D< ComplexTraits >
- getFourierSpaceMaxX()
: BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
- getFourierSpaceMaxY()
: BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
- getFourierSpaceMaxZ()
: BALL::TFFT3D< ComplexTraits >
- getFourierSpaceMin()
: BALL::TFFT1D< ComplexTraits >
- getFourierSpaceMinX()
: BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
- getFourierSpaceMinY()
: BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
- getFourierSpaceMinZ()
: BALL::TFFT3D< ComplexTraits >
- getFourierStepWidth()
: BALL::TFFT1D< ComplexTraits >
- getFourierStepWidthX()
: BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
- getFourierStepWidthY()
: BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
- getFourierStepWidthZ()
: BALL::TFFT3D< ComplexTraits >
- getFragment()
: BALL::Atom
, BALL::SecondaryStructure
, BALL::FragmentDB
- getFragmentCopy()
: BALL::FragmentDB
- getFragmentDB()
: BALL::AssignShiftProcessor
, BALL::ElectrostaticPotentialCalculator
, BALL::Peptides::PeptideBuilder
, BALL::ReconstructFragmentProcessor
, BALL::VIEW::MainControl
, BALL::VIEW::ModularWidget
- getFragments()
: BALL::FragmentDB
- getFragmentType()
: BALL::FragmentDB
- getFrameBufferFormat()
: BALL::VIEW::BufferedRenderer
- getFresnoTypes()
: BALL::HydrogenBond
- getFrustum()
: BALL::VIEW::GLRenderer
- getFTP_()
: BALL::TCPTransfer
- getFTPMessage_()
: BALL::TCPTransfer
- getFTPStatus_()
: BALL::TCPTransfer
- getFullName()
: BALL::Atom
, BALL::Residue
- getFunction()
: BALL::Reciprocal< Function, DataType >
, BALL::SquareFunction< Function, DataType >
, BALL::CubicFunction< Function, DataType >
, BALL::MutablePower< Function, DataType >
, BALL::NumericalIntegrator< Function, DataType >
- getGeometricObjects()
: BALL::VIEW::Representation
, BALL::VIEW::ModelProcessor
- getGLErrorString()
: BALL::VIEW::GLRenderWindow
- getGlobalPeak_()
: BALL::GeometricFit
- getGLRenderer()
: BALL::VIEW::Scene
- getGLSettings()
: BALL::VIEW::StageSettings
- getGradient()
: BALL::EnergyMinimizer
- getGraph()
: BALL::UCK
- getGreen()
: BALL::VIEW::ColorRGBA
- getGrid()
: BALL::VIEW::ContourSurfaceDialog
, BALL::VIEW::RaytraceableContourSurfaceDialog
, BALL::VIEW::GridVisualisation
- getGridCoordinates()
: BALL::TFFT1D< ComplexTraits >
, BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
- getGridMaxValue()
: BALL::VIEW::RaytraceableGrid
- getGridMinValue()
: BALL::VIEW::RaytraceableGrid
- getGroup()
: BALL::Element
- getGuestLayout()
: BALL::VIEW::DockWidget
- getHandle()
: BALL::Object
- getHAtom()
: BALL::CHPI::CHGroup
- getHBondPairs()
: BALL::HBondProcessor
- getHBondsRadius()
: BALL::VIEW::ModelSettingsDialog
- getHeader()
: BALL::Bruker1DFile
, BALL::JCAMPFile
- getHeight()
: BALL::Composite
, BALL::TBox3< T >
, BALL::TSimpleBox3< T >
, BALL::VIEW::Renderer
, BALL::VIEW::FrameBufferFormat
- getHeight_()
: BALL::Composite
- getHeightVector()
: BALL::TBox3< T >
- getHelixColor()
: BALL::VIEW::SecondaryStructureColorProcessor
- getHelixRadius()
: BALL::VIEW::AddCartoonModel
- getHelpEntryFor()
: BALL::VIEW::HelpViewer
- getHighlightedRepresentations()
: BALL::VIEW::GeometricControl
- getHostAddress()
: BALL::TCPTransfer
- getHTTP_()
: BALL::TCPTransfer
- getHTTPStatus_()
: BALL::TCPTransfer
- getHue()
: BALL::VIEW::ColorHSV
- getHybridisationMap()
: BALL::HybridisationProcessor
- getHydrogenBondScore()
: BALL::SLICKEnergy
, BALL::SLICKScore
- getHydrogenTypes_()
: BALL::GAFFTypeProcessor
- getHydrophobicColor()
: BALL::VIEW::ResidueTypeColorProcessor
- getIcon()
: BALL::VIEW::VIEWPlugin
- getIcosaederInterplationSteps()
: BALL::VIEW::FieldLinesDialog
- getID()
: BALL::PDBInfo
, BALL::NucleicAcid
, BALL::Nucleotide
, BALL::Protein
, BALL::Residue
- getId()
: BALL::UCK
- getIdentifier()
: BALL::Embeddable
- getIdentity()
: BALL::TMatrix4x4< T >
- getImage()
: BALL::VIEW::GLOffscreenTarget
- getImproperTorsionEnergy()
: BALL::CharmmFF
- getImprovedFlag()
: BALL::StrangLBFGSMinimizer
- getIndex()
: BALL::TContourSurface< T >::Cube
, BALL::Atom
, BALL::SnapShot
, BALL::ChainBuilder
, BALL::GraphEdge< Vertex, Edge, Face >
, BALL::GraphFace< Vertex, Edge, Face >
, BALL::GraphTriangle< Vertex, Edge, Face >
, BALL::GraphVertex< Vertex, Edge, Face >
, BALL::RDFParameter
- getIndex_()
: BALL::HashGrid3< Item >
, BALL::MMFF94BendParameters
, BALL::MMFF94StretchBendParameters
, BALL::MMFF94TorsionParameters
, BALL::MMFF94PlaneParameters
, BALL::MMFF94ESParameters
- getIndexByRow_()
: BALL::MMFF94StretchBendParameters
- getIndices()
: BALL::HashGrid3< Item >
, BALL::ClaverieParameter
- getInfoColor()
: BALL::VIEW::Stage
- getInformationVisitor_()
: BALL::VIEW::MolecularControl
- getINIFile()
: BALL::VIEW::MainControl
- getINIFileSectionName()
: BALL::VIEW::PreferencesEntry
- getInitialEnergy()
: BALL::EnergyMinimizer
- getInitialGradient()
: BALL::EnergyMinimizer
- getInsertedAtoms()
: BALL::ReconstructFragmentProcessor
- getInsertionCode()
: BALL::Nucleotide
, BALL::Residue
- getInstance_()
: BALL::Embeddable
- getInt()
: BALL::NamedProperty
- getInteger()
: BALL::Options
- getIntensity()
: BALL::Peak< PositionType >
, BALL::VIEW::LightSource
- getIntercept()
: BALL::ScoringFunction
- getInterpolatedValue()
: BALL::TRegularData1D< ValueType >
, BALL::TRegularData2D< ValueType >
, BALL::TRegularData3D< ValueType >
, BALL::TFFT1D< ComplexTraits >
, BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
- getInterpolationSteps()
: BALL::VIEW::FieldLinesDialog
- getIntersectionPoint()
: BALL::RSEdge
- getIntersectionPointsAndAngles()
: BALL::SESSingularityCleaner
- getIntersectionsOfSingularEdge()
: BALL::SESSingularityCleaner
- getInterval()
: BALL::PiecewiseFunction
- getIntervalIndex()
: BALL::PiecewiseFunction
- getIntervals()
: BALL::PiecewiseFunction
- getIntValue()
: BALL::JCAMPFile
- getInvalidRecords()
: BALL::PDBInfo
- getInverse()
: BALL::TQuaternion< T >
- getInverseColor()
: BALL::VIEW::ColorRGBA
- getIonizationEnergy_()
: BALL::PartialChargeProcessor
- getIsotope()
: BALL::SmilesParser::SPAtom
- getKappa()
: BALL::GeneralizedBornModel::GBParameters
- getKey()
: BALL::ParameterSection
, BALL::ResourceEntry
- getKeySequence()
: BALL::VIEW::EditSingleShortcut
- getKineticEnergy()
: BALL::SnapShot
, BALL::MolecularDynamics
- getLastChild()
: BALL::Composite
- getLastColor()
: BALL::VIEW::ResidueNumberColorProcessor
- getLastHighLightedMenuEntry()
: BALL::VIEW::MainControl
- getLastIndex()
: BALL::Substring
- getLastPosition()
: BALL::SmartsMatcher::RecStructPool_
- getLayers()
: BALL::BindingPocketProcessor
- getLength()
: BALL::Bond
, BALL::TVector2< T >
, BALL::TVector3< T >
, BALL::TVector4< T >
, BALL::VIEW::Tube
, BALL::VIEW::TwoColoredTube
- getLevel()
: BALL::LogStream
- getLigand()
: BALL::ScoringFunction
- getLightSources()
: BALL::VIEW::Stage
- getline()
: BALL::String
- getLine()
: BALL::Exception::GeneralException
, BALL::INIFile
, BALL::LineBasedFile
- getLineLevel()
: BALL::LogStream
- getLineNumber()
: BALL::LineBasedFile
- getLineText()
: BALL::LogStream
- getLineTime()
: BALL::LogStream
- getLinkSet()
: BALL::ConnectedToPredicate::CTPNode
- getLockingWidget()
: BALL::VIEW::MainControl
- getLoggingFilename()
: BALL::VIEW::MainControl
- getLogicalOperator()
: BALL::SmartsParser::SPEdge
, BALL::SmartsParser::SPNode
- getLogin()
: BALL::TCPTransfer
- getLookAtPosition()
: BALL::VIEW::Camera
- getLookUpVector()
: BALL::VIEW::Camera
- getLower()
: BALL::BoundingBoxProcessor
- getLowerBound()
: BALL::LineSearch
- getLowerIndex()
: BALL::TRegularData1D< ValueType >
, BALL::TRegularData2D< ValueType >
, BALL::TRegularData3D< ValueType >
- getLowestCommonAncestor()
: BALL::Composite
- getMainControl()
: BALL::VIEW::MainControl
, BALL::VIEW::ModularWidget
- getMajorRadiusOfTorus()
: BALL::RSEdge
- getMajorRevision()
: BALL::VersionInfo
- getMassCenter_()
: BALL::GeometricFit
- getMatrix()
: BALL::VIEW::TransformationMessage
- getMaxBondLength_()
: BALL::BuildBondsProcessor
- getMaxColor()
: BALL::VIEW::InterpolateColorProcessor
- getMaxDistanceColor()
: BALL::VIEW::AtomDistanceColorProcessor
- getMaxGradient()
: BALL::VIEW::MinimizationDialog
, BALL::EnergyMinimizer
- getMaximalNumberOfIterations()
: BALL::MolecularDynamics
- getMaximalRadius()
: BALL::ReducedSurface
- getMaximalSimulationTime()
: BALL::MolecularDynamics
- getMaximumDisplacement()
: BALL::EnergyMinimizer
- getMaximumNumberOfErrors()
: BALL::ForceField
, BALL::ScoringFunction
- getMaximumUnassignedAtoms()
: BALL::AssignBaseProcessor
, BALL::Templates
- getMaximumValence_()
: BALL::Kekuliser
- getMaxIndex()
: BALL::TFFT1D< ComplexTraits >
- getMaxIntensity()
: BALL::PeakList< PT >
- getMaxIterations()
: BALL::VIEW::MinimizationDialog
- getMaxLength()
: BALL::VIEW::ForceModel
- getMaxNumberOfIterations()
: BALL::EnergyMinimizer
- getMaxNumOfColumns()
: BALL::ShiftedLVMMMinimizer
- getMaxNumOfStoredVectPairs()
: BALL::StrangLBFGSMinimizer
- getMaxSameEnergy()
: BALL::EnergyMinimizer
- getMaxSteps()
: BALL::LineSearch
, BALL::VIEW::FieldLinesDialog
- getMaxValue()
: BALL::VIEW::InterpolateColorProcessor
- getMaxXIndex()
: BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
- getMaxYIndex()
: BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
- getMaxZIndex()
: BALL::TFFT3D< ComplexTraits >
- getMDSimulationDialog()
: BALL::VIEW::MolecularStructure
- getMembers()
: BALL::VIEW::PyWidget
- getMenuHint()
: BALL::VIEW::MainControl
- getMesh()
: BALL::VIEW::MeshBuffer
- getMessage()
: BALL::Exception::GeneralException
, BALL::VIEW::LogEvent
, BALL::VIEW::MessageEvent
- getMicroSeconds()
: BALL::PreciseTime
- getMiddleColor()
: BALL::VIEW::ResidueNumberColorProcessor
- getMiddleVertex()
: BALL::VIEW::TwoColoredLine
, BALL::VIEW::TwoColoredTube
- getMinBondLength_()
: BALL::BuildBondsProcessor
- getMinColor()
: BALL::VIEW::InterpolateColorProcessor
- getMinimizationDialog()
: BALL::VIEW::MolecularStructure
- getMinIntensity()
: BALL::PeakList< PT >
- getMinorRevision()
: BALL::VersionInfo
- getMinValue()
: BALL::VIEW::InterpolateColorProcessor
- getMMFF94()
: BALL::VIEW::MolecularStructure
- getMMFF94ConfigurationDialog()
: BALL::VIEW::MolecularStructure
- getMode()
: BALL::VIEW::InterpolateColorProcessor
, BALL::VIEW::Scene
- getModelBuildTime()
: BALL::VIEW::Representation
- getModelInformation()
: BALL::VIEW::Representation
, BALL::VIEW::MainControl
- getModelName()
: BALL::VIEW::ModelInformation
- getModelProcessor()
: BALL::VIEW::Representation
- getModelType()
: BALL::VIEW::CreateRepresentationMessage
, BALL::VIEW::Representation
- getModificationTime()
: BALL::Composite
- getModifySurfaceDialog()
: BALL::VIEW::GeometricControl
- getModuleList()
: BALL::ShiftModel
- getModulus()
: BALL::EnumeratorIndex
- getMolecularControlSelection()
: BALL::VIEW::MainControl
- getMolecule()
: BALL::Atom
, BALL::Molecule
, BALL::System
, BALL::Molecule
- getMoleculeCopy()
: BALL::FragmentDB
- getMonteCarloNumberLines()
: BALL::VIEW::FieldLinesDialog
- getMousePositionX()
: BALL::VIEW::Scene
- getMousePositionY()
: BALL::VIEW::Scene
- getMouseSensitivity()
: BALL::VIEW::Scene
- getMouseWheelSensitivity()
: BALL::VIEW::Scene
- getMoveModeAction_()
: BALL::VIEW::Scene
- getName()
: BALL::Exception::GeneralException
, BALL::MolecularInformation
, BALL::Options
, BALL::INIFile::Section
, BALL::PDBInfo
, BALL::AtomContainer
, BALL::Bond
, BALL::Element
, BALL::ForceField
, BALL::ForceFieldComponent
, BALL::ShiftModule
, BALL::BALLPlugin
, BALL::ScoringComponent
, BALL::SolventDescriptor
, BALL::ResidueRotamerSet
, BALL::VIEW::Dataset
, BALL::VIEW::Representation
, BALL::VIEW::VIEWPlugin
, BALL::VIEW::GLRenderer
, BALL::File
, BALL::Descriptor
, BALL::Atom
, BALL::NamedProperty
- getName_()
: BALL::MolecularInformation
- getNamedProperty()
: BALL::PropertyManager
- getNameFromFileName_()
: BALL::VIEW::DatasetController
- getNames()
: BALL::VIEW::QColorTable
- getNamesTitle()
: BALL::VIEW::QColorTable
- getNamingStandard()
: BALL::FragmentDB
, BALL::FragmentDB::NormalizeNamesProcessor
- getNamingStandards()
: BALL::FragmentDB
- getNearestBackboneTorsion_()
: BALL::RotamerLibrary
- getNearestBondOrder_()
: BALL::BuildBondsProcessor
- getNeedsSSSR()
: BALL::SmartsParser
- getNegate()
: BALL::ExpressionTree
- getNeighbours()
: BALL::SDGenerator
- getNewHandle()
: BALL::Object
- getNext()
: BALL::Composite
- getNextContourLine()
: BALL::TContour< T >
- getNextEntry()
: BALL::Directory
- getNextFree()
: BALL::SmartsMatcher::RecStructPool_
- getNextHandle()
: BALL::Object
- getNextPoint()
: BALL::TContourLine< T >
- getNextPowerOfTwo_()
: BALL::VIEW::RegularData3DController
- getNextTarget()
: BALL::NotificationTarget_
- getNitrogenTypes_()
: BALL::GAFFTypeProcessor
- getNode()
: BALL::TMolecularGraph< Node, Edge >
- getNodes()
: BALL::SmartsParser
- getNonBondedData()
: BALL::MMFF94NonBonded
- getNonbondedEnergy()
: BALL::AmberFF
, BALL::CharmmFF
, BALL::MMFF94
- getNonpolarSolvationScore()
: BALL::SLICKEnergy
, BALL::SLICKScore
- getNormal()
: BALL::TSurface< T >
, BALL::RSFace
, BALL::SESVertex
, BALL::TrianglePoint
, BALL::VIEW::GridVisualisation
, BALL::VIEW::ClippingPlane
- getNormal_()
: BALL::AddHydrogenProcessor
- getNormalVector()
: BALL::CHPI::AromaticRing
, BALL::DNAMutator
- getNot()
: BALL::SmartsParser::SPNode
- getNotificationType_()
: BALL::NotificationTarget< NotificationSource >
, BALL::NotificationTarget1< NotificationSource, T1 >
, BALL::NotificationTarget2< NotificationSource, T1, T2 >
- getNTerminal()
: BALL::Chain
, BALL::Protein
, BALL::SecondaryStructure
- getNucleicAcid()
: BALL::Nucleotide
- getNucleotide()
: BALL::NucleicAcid
- getNullDistanceColor()
: BALL::VIEW::AtomDistanceColorProcessor
- getNumberDensity()
: BALL::SolventDescriptor
- getNumberOfAddedHydrogens()
: BALL::AddHydrogenProcessor
, BALL::AssignBondOrderProcessor
- getNumberOfAssignments()
: BALL::AssignRadiusProcessor
- getNumberOfATOMRecords()
: BALL::PDBInfo
- getNumberOfAtoms()
: BALL::NMRStarFile
, BALL::TrajectoryFile
, BALL::ForceField
, BALL::SnapShot
- getNumberOfAtomTypes()
: BALL::SolventDescriptor
- getNumberOfBondsBuilt()
: BALL::BuildBondsProcessor
, BALL::FragmentDB::BuildBondsProcessor
- getNumberOfChildren()
: BALL::ConnectedToPredicate::CTPNode
- getNumberOfClasses()
: BALL::PersistenceManager
- getNumberOfColors()
: BALL::VIEW::ColorMap
- getNumberOfComposites()
: BALL::VIEW::CompositeManager
- getNumberOfComputedSolutions()
: BALL::AssignBondOrderProcessor
- getNumberOfEdges()
: BALL::TMolecularGraph< Node, Edge >
, BALL::TriangulatedSurface
- getNumberOfEnergyProcessors()
: BALL::ComposedEnergyProcessor
- getNumberOfErrors()
: BALL::AssignRadiusProcessor
- getNumberOfFragments()
: BALL::FragmentDistanceCollector
- getNumberOfHETATMRecords()
: BALL::PDBInfo
- getNumberOfHybridisationStatesSet()
: BALL::HybridisationProcessor
- getNumberOfImplicitHydrogens()
: BALL::SmartsParser::SPAtom
- getNumberOfInsertedAtoms()
: BALL::ReconstructFragmentProcessor
- getNumberOfInverseTransforms()
: BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
, BALL::TFFT1D< ComplexTraits >
- getNumberOfIterations()
: BALL::MolecularDynamics
, BALL::FDPB
, BALL::EnergyMinimizer
- getNumberOfKeys()
: BALL::ParameterSection
- getNumberOfLines()
: BALL::LogStream
, BALL::INIFile
- getNumberOfModels()
: BALL::PDBInfo
- getNumberOfMovableAtoms()
: BALL::ForceField
- getNumberOfNodeExpansions()
: BALL::AssignBondOrderProcessor
, BALL::AssignBondOrderProcessor::Solution_
- getNumberOfNodeExpansions_()
: BALL::AssignBondOrderProcessor
- getNumberOfNodes()
: BALL::TMolecularGraph< Node, Edge >
- getNumberOfNormals()
: BALL::TSurface< T >
- getNumberOfPartners()
: BALL::GAFFCESParser::CESelementConnectionPredicate
, BALL::GAFFCESParser::CESwildcardsConnectionPredicate
- getNumberOfPoints()
: BALL::TriangulatedSurface
- getNumberOfRecords()
: BALL::PDBInfo
- getNumberOfRepresentations()
: BALL::VIEW::RepresentationManager
- getNumberOfResidueTorsions()
: BALL::ResidueTorsions
- getNumberOfRotamers()
: BALL::ResidueRotamerSet
, BALL::RotamerLibrary
- getNumberOfRotamerSets()
: BALL::RotamerLibrary
- getNumberOfSections()
: BALL::INIFile
- getNumberOfSelectedAtoms()
: BALL::Selector
- getNumberOfSets()
: BALL::MOL2File
- getNumberOfSnapShots()
: BALL::TrajectoryFile
- getNumberOfSnapShotsInBuffer()
: BALL::SnapShotManager
- getNumberOfSteps()
: BALL::VIEW::MolecularDynamicsDialog
- getNumberOfTorsions()
: BALL::ResidueRotamerSet
- getNumberOfTriangles()
: BALL::TSurface< T >
, BALL::TriangulatedSurface
- getNumberOfTypes()
: BALL::AtomTypes
- getNumberOfUnassignedAtoms()
: BALL::AssignBaseProcessor
, BALL::Templates
- getNumberOfVariables()
: BALL::ParameterSection
- getNumberOfVertices()
: BALL::TSurface< T >
- getNumChannels()
: BALL::VIEW::PixelFormat
- getObject()
: BALL::NamedProperty
, BALL::VIEW::RegisterHelpSystemMessage
, BALL::VIEW::GLRenderer
- getObjectCreator()
: BALL::VIEW::ServerWidget
- getObjectHeader()
: BALL::PersistenceManager
, BALL::XDRPersistenceManager
, BALL::TextPersistenceManager
- getOccupancy()
: BALL::PDBAtom
- getOffset()
: BALL::VIEW::ForceModel
- getOmega()
: BALL::Peptides::AminoAcidDescriptor
- getOpenGLVersion()
: BALL::VIEW::GLRenderer
- getOpenMode()
: BALL::File
- getOppositeEdge()
: BALL::GraphTriangle< Vertex, Edge, Face >
- getOppositeVertex()
: BALL::GraphTriangle< Vertex, Edge, Face >
- getOptions()
: BALL::AmberEvaluation
, BALL::ForceFieldEvaluation
, BALL::VIEW::GeometricFitDialog
- getOrder()
: BALL::Bond
- getOrientation()
: BALL::GeometricFit
- getOrigin()
: BALL::TContourSurface< T >::Cube
, BALL::HashGrid3< Item >
, BALL::TRegularData1D< ValueType >
, BALL::TRegularData3D< ValueType >
, BALL::VIEW::HeadTrackingEvent
, BALL::VIEW::MotionTrackingEvent
, BALL::TRegularData2D< ValueType >
- getOriginalName()
: BALL::File
- getOrthogonalProjection()
: BALL::TVector3< T >
- getOrthogonalVector()
: BALL::DNAMutator
- getOtherColor()
: BALL::VIEW::ResidueTypeColorProcessor
- getOutOfPlaneBends()
: BALL::MMFF94OutOfPlaneBend
- getOxygenTypes_()
: BALL::GAFFTypeProcessor
- getParameterFile()
: BALL::Parameters
- getParameters()
: BALL::Bruker1DFile
, BALL::MMFF94VDWParameters
, BALL::CharmmEEF1
, BALL::CosineTorsion
, BALL::Potential1210
, BALL::QuadraticAngleBend
, BALL::QuadraticBondStretch
, BALL::ShiftModel
, BALL::ShiftModule
, BALL::ClaverieParameter
, BALL::QuadraticImproperTorsion
, BALL::LennardJones
, BALL::ForceField
- getParent()
: BALL::Composite
, BALL::ResourceEntry
, BALL::ConnectedToPredicate::CTPNode
, BALL::VIEW::ConnectionObject
, BALL::ResourceEntry
- getPartialCharge()
: BALL::MMFF94ESParameters
- getPartner()
: BALL::Bond
- getPartnerAtom()
: BALL::Atom
- getPartners_()
: BALL::AddHydrogenProcessor
- getPartnerSPNode()
: BALL::SmartsParser::SPEdge
- getPassword()
: BALL::TCPTransfer
- getPath()
: BALL::ResourceEntry
, BALL::Directory
- getPathLength()
: BALL::Composite
- getPattern()
: BALL::RegularExpression
- getPBCI()
: BALL::MMFF94ESParameters
- getPDBAtom()
: BALL::Chain
, BALL::Protein
, BALL::Residue
, BALL::SecondaryStructure
, BALL::Residue
, BALL::Chain
- getPeakList()
: BALL::CreateSpectrumProcessor
, BALL::Experiment< PeakListType >
, BALL::Bruker2DFile
- getPenalty_()
: BALL::Kekuliser
- getPenaltyClass_()
: BALL::AssignBondOrderProcessor
- getPeriod()
: BALL::Element
- getPeriodicBoundary()
: BALL::HINFile
- getPerpendicularNormalization()
: BALL::TVector3< T >
- getPhi()
: BALL::Peptides::AminoAcidDescriptor
, BALL::MMFF94ESParameters
- getPhysSpaceMax()
: BALL::TFFT1D< ComplexTraits >
- getPhysSpaceMaxX()
: BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
- getPhysSpaceMaxY()
: BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
- getPhysSpaceMaxZ()
: BALL::TFFT3D< ComplexTraits >
- getPhysSpaceMin()
: BALL::TFFT1D< ComplexTraits >
- getPhysSpaceMinX()
: BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
- getPhysSpaceMinY()
: BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
- getPhysSpaceMinZ()
: BALL::TFFT3D< ComplexTraits >
- getPhysStepWidth()
: BALL::TFFT1D< ComplexTraits >
- getPhysStepWidthX()
: BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
- getPhysStepWidthY()
: BALL::TFFT2D< ComplexTraits >
, BALL::TFFT3D< ComplexTraits >
- getPhysStepWidthZ()
: BALL::TFFT3D< ComplexTraits >
- getPitch()
: BALL::VIEW::FrameBufferFormat
- getPixelFormat()
: BALL::VIEW::FrameBufferFormat
- getPixmap()
: BALL::VIEW::CanvasWidget::PixmapItem
- getPlaneEnergy()
: BALL::MMFF94
- getPluginCount()
: BALL::PluginManager
- getPluginDirectories()
: BALL::PluginManager
- getPluginInstance()
: BALL::PluginManager
- getPoint()
: BALL::VIEW::ClippingPlane
, BALL::SESVertex
, BALL::TrianglePoint
, BALL::SASVertex
, BALL::SESComputer
, BALL::TBox3< T >
, BALL::Triangle
, BALL::TriangleEdge
, BALL::VIEW::GridVisualisation
- getPolarColor()
: BALL::VIEW::ResidueTypeColorProcessor
- getPolarSolvationScore()
: BALL::SLICKEnergy
, BALL::SLICKScore
- getPort()
: BALL::VIEW::ServerWidget
, BALL::TCPTransfer
, BALL::VIEW::ServerPreferences
, BALL::TCPServer
- getPosition()
: BALL::Composite::AncestorIteratorTraits
, BALL::Peak< PositionType >
, BALL::VIEW::LightSource
, BALL::Atom::BondIteratorTraits
, BALL::HashGridBox3< Item >::DataIteratorTraits
, BALL::Composite::ChildCompositeIteratorTraits
, BALL::ResourceEntry::IteratorTraits_
, BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
, BALL::Composite::AncestorIteratorTraits
, BALL::Composite::CompositeIteratorTraits
, BALL::HashGridBox3< Item >::BoxIteratorTraits
, BALL::ResourceEntry::IteratorTraits_
, BALL::HashGrid3< Item >::BoxIteratorTraits
, BALL::HashSet< Key >::IteratorTraits
, BALL::INIFile::IteratorTraits_
, BALL::Atom
, BALL::Atom::BondIteratorTraits
, BALL::CompositeIteratorTraits
, BALL::Composite::CompositeIteratorTraits
, BALL::Composite::ChildCompositeIteratorTraits
, BALL::HashGridBox3< Item >::BoxIteratorTraits
, BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
, BALL::HashGrid3< Item >::BoxIteratorTraits
, BALL::Bruker2DFile
, BALL::Atom
, BALL::CompositeIteratorTraits
, BALL::VIEW::Sphere
- getPosition_()
: BALL::VIEW::LightSettings
- getPositionAddress()
: BALL::VIEW::Sphere
- getPotentialEnergy()
: BALL::MolecularDynamics
, BALL::SnapShot
- getPrecision()
: BALL::TRRFile
- getPredicate()
: BALL::ExpressionTree
, BALL::CompositeIteratorTraits
, BALL::Expression
- getPreferences()
: BALL::VIEW::MainControl
- getPrefix()
: BALL::RuleEvaluator
- getPrevious()
: BALL::Composite
- getProbeRadius()
: BALL::SurfaceProcessor
, BALL::VIEW::AddSurfaceModel
, BALL::ReducedSurface
- getProgress()
: BALL::GeometricFit
, BALL::DockingAlgorithm
- getProject()
: BALL::VIEW::ShowHelpMessage
, BALL::VIEW::HelpViewer
- getPrompt_()
: BALL::VIEW::PyWidget
- getProperties()
: BALL::VIEW::Representation
- getProperTorsionEnergy()
: BALL::CharmmFF
- getProperty()
: BALL::PropertyManager
, BALL::SmartsParser::SPAtom
- getProtein()
: BALL::Residue
, BALL::SecondaryStructure
, BALL::Chain
, BALL::System
, BALL::VIEW::PeptideDialog
, BALL::Chain
, BALL::PDBAtom
, BALL::Residue
, BALL::System
, BALL::PDBAtom
, BALL::SecondaryStructure
- getProteinName()
: BALL::Peptides::PeptideBuilder
- getProtocol()
: BALL::TCPTransfer
- getProxy()
: BALL::VIEW::MainControl
- getProxyPort()
: BALL::VIEW::MainControl
- getPsi()
: BALL::Peptides::AminoAcidDescriptor
- getQColor()
: BALL::VIEW::ColorRGBA
- getQueueSize()
: BALL::AssignBondOrderProcessor::Solution_
, BALL::AssignBondOrderProcessor
- getQueueSize_()
: BALL::AssignBondOrderProcessor
- getR()
: BALL::MMFF94VDWParameters
- getRadius()
: BALL::Atom
, BALL::VIEW::HBondModelProcessor
, BALL::VIEW::Tube
, BALL::VIEW::TwoColoredTube
, BALL::VIEW::Sphere
- getRadius_()
: BALL::GeometricFit
- getRange()
: BALL::RadialDistributionFunction
, BALL::PiecewiseFunction
- getRDF()
: BALL::RDFParameter
, BALL::RDFIntegrator
, BALL::RDFSection
, BALL::RDFParameter
- getRDFIntegrator()
: BALL::Pair6_12InteractionEnergyProcessor
- getRDFParameter()
: BALL::Pair6_12InteractionEnergyProcessor
- getReactionFieldEnergy()
: BALL::FDPB
- getReal()
: BALL::Options
- getReceivedBytes()
: BALL::TCPTransfer
- getReceivedBytes_()
: BALL::TCPTransfer
- getReceiver()
: BALL::VIEW::InputDeviceDriver
- getReceptor()
: BALL::ScoringFunction
- getRecordIndices()
: BALL::PDBInfo
- getRecordNumber()
: BALL::PDBFile
- getRecordString()
: BALL::PDBFile
- getRecordType()
: BALL::PDBFile
- getRed()
: BALL::VIEW::ColorRGBA
- getReferenceFragment()
: BALL::FragmentDB
- getRefresh()
: BALL::VIEW::MinimizationDialog
- getRelativeIndex()
: BALL::GraphTriangle< Vertex, Edge, Face >
- getRemotenessIndicator()
: BALL::PDBAtom
- getRenderer()
: BALL::VIEW::GLRenderer
- getRenderMode()
: BALL::VIEW::GLRenderer
- getRepresentation()
: BALL::VIEW::UpdateRepresentationThread
, BALL::VIEW::DisplayProperties
, BALL::VIEW::RepresentationMessage
, BALL::RadialDistributionFunction
- getRepresentationManager()
: BALL::VIEW::MainControl
- getRepresentations()
: BALL::VIEW::ClippingPlane
, BALL::VIEW::RepresentationManager
- getRepresentationsOf()
: BALL::VIEW::RepresentationManager
- getResidue()
: BALL::Protein
, BALL::Chain
, BALL::Atom
, BALL::Chain
, BALL::PDBAtom
, BALL::SecondaryStructure
, BALL::FragmentDB
, BALL::Atom
, BALL::PDBAtom
, BALL::SecondaryStructure
- getResidueCopy()
: BALL::FragmentDB
- getResidueData()
: BALL::HBondProcessor
- getResults()
: BALL::ForceField
, BALL::AmberFF
, BALL::MMFF94
, BALL::CharmmFF
- getRightVector()
: BALL::TBox3< T >
, BALL::VIEW::Camera
- getRing()
: BALL::CHPI::AromaticRing
- getRing_()
: BALL::RingPerceptionProcessor
- getRingAtoms()
: BALL::RingFinder
- getRingConnections()
: BALL::SmartsParser
- getRings()
: BALL::MMFF94
- getRMSGradient()
: BALL::ForceField
- getRoot()
: BALL::ResourceFile
, BALL::SmartsParser
, BALL::Composite
, BALL::ResourceEntry
, BALL::ResourceFile
, BALL::ResourceEntry
, BALL::VIEW::ConnectionObject
- getRotamer()
: BALL::ResidueRotamerSet
- getRotamerSet()
: BALL::RotamerLibrary
- getRotation()
: BALL::VIEW::TransformationEvent6D
- getRotationMatrix()
: BALL::TQuaternion< T >
- getRotationNum()
: BALL::GeometricFit::RotationAngles_
- getRow()
: BALL::TMatrix4x4< T >
- getRS()
: BALL::SolventAccessibleSurface
- getRSComponent()
: BALL::RSComputer
- getRSEdge()
: BALL::SESFace
, BALL::SESEdge
- getRSFace()
: BALL::SESFace
- getRSVertex()
: BALL::SESFace
- getRTMaterial()
: BALL::VIEW::Stage
- getSaturation()
: BALL::VIEW::ColorHSV
- getScaling()
: BALL::VIEW::ForceModel
- getScalingFactors()
: BALL::GeneralizedBornModel
, BALL::GeneralizedBornModel::GBParameters
- getScene()
: BALL::VIEW::AnimationThread
- getScore()
: BALL::ScoringComponent
- getScores()
: BALL::DockResult
- getScoring()
: BALL::ConformationSet
- getScoringFunction()
: BALL::ScoringComponent
- getScoringName()
: BALL::DockResult
- getScoringOptions()
: BALL::DockResult
, BALL::VIEW::DockDialog
- getScreenPosition_()
: BALL::VIEW::EditableScene
- getSecond()
: BALL::Addition< First, Second, DataType >
, BALL::Product< First, Second, DataType >
, BALL::Subtraction< First, Second, DataType >
, BALL::Division< First, Second, DataType >
, BALL::Addition< First, Second, DataType >
- getSecondaryStructure()
: BALL::Residue
, BALL::Atom
, BALL::Protein
, BALL::Residue
, BALL::Atom
, BALL::Chain
- getSecondAtom()
: BALL::Bond
- getSecondEdge()
: BALL::SmartsParser::SPNode
- getSecondMolecule()
: BALL::ScoringFunction
- getSecondNitro()
: BALL::DNAMutator
- getSeconds()
: BALL::PreciseTime
- getSecondSPEdge()
: BALL::SmartsParser::SPEdge
- getSecondSPNode()
: BALL::SmartsParser::SPEdge
- getSection()
: BALL::INIFile
, BALL::INIFile::IteratorTraits_
, BALL::INIFile
- getSectionFirstLine()
: BALL::INIFile
- getSectionLastLine()
: BALL::INIFile
- getSectionLength()
: BALL::INIFile
- getSectionName()
: BALL::ParameterSection
- getSectionNextLine()
: BALL::INIFile::IteratorTraits_
- getSeedMode()
: BALL::VIEW::FieldLinesDialog
- getSelectedAtoms()
: BALL::Selector
- getSelectedDataset()
: BALL::VIEW::DatasetController
- getSelectedDatasets()
: BALL::VIEW::DatasetController
- getSelectedItems()
: BALL::VIEW::GenericControl
- getSelectedModel()
: BALL::PDBFile
- getSelectedSystem()
: BALL::VIEW::MainControl
- getSelection()
: BALL::VIEW::MainControl
, BALL::VIEW::GenericSelectionMessage
, BALL::VIEW::GeometricObjectSelectionMessage
, BALL::VIEW::MolecularControl
, BALL::VIEW::MainControl
- getSelectionSize()
: BALL::VIEW::DatasetControl
- getSelectionTime()
: BALL::Composite
- getSender()
: BALL::VIEW::Message
- getSeparation_()
: BALL::GeometricFit
- getSequence()
: BALL::VIEW::PeptideDialog
- getServerStatus()
: BALL::VIEW::ServerPreferences
- getSet()
: BALL::MOL2File
- getSettings()
: BALL::VIEW::ColoringSettingsDialog
, BALL::VIEW::NetworkPreferences
, BALL::VIEW::ModelSettingsDialog
- getSettingsFromString()
: BALL::VIEW::DisplayProperties
- getSetupTime()
: BALL::ForceField
- getShift()
: BALL::Bruker2DFile
- getShininess()
: BALL::VIEW::Stage
- getShortcutRegistry()
: BALL::VIEW::MainControl
- getSibling()
: BALL::Composite
- getSimilarEdge()
: BALL::GraphFace< Vertex, Edge, Face >
, BALL::GraphTriangle< Vertex, Edge, Face >
- getSimulationThread()
: BALL::VIEW::MainControl
- getSimulationTime()
: BALL::VIEW::MolecularDynamicsDialog
- getSingularFaces()
: BALL::SESSingularityCleaner
- getSize()
: BALL::ResourceEntry
, BALL::NotificationManager_
, BALL::HashGridBox3< Item >
, BALL::HashSet< Key >
, BALL::File
, BALL::TRegularData3D< ValueType >
, BALL::File
, BALL::StringHashMap< Value >
, BALL::List< Value >
, BALL::TRegularData1D< ValueType >
, BALL::TRegularData2D< ValueType >
, BALL::BitVector
, BALL::HashGrid3< Item >
, BALL::EnumeratorIndex
, BALL::ResourceFile
- getSizeX()
: BALL::HashGrid3< Item >
- getSizeY()
: BALL::HashGrid3< Item >
- getSizeZ()
: BALL::HashGrid3< Item >
- getSkippedRecords()
: BALL::PDBInfo
- getSmartObject()
: BALL::NamedProperty
- getSmoothLines()
: BALL::VIEW::GLRenderer
- getSnapShotFrequency()
: BALL::MolecularDynamics
, BALL::EnergyMinimizer
- getSnapShotManager()
: BALL::VIEW::SnapshotVisualisationDialog
- getSoluteDC()
: BALL::GeneralizedBornModel::GBParameters
- getSolution()
: BALL::AssignBondOrderProcessor
- getSolvationEnergy()
: BALL::CharmmFF
, BALL::CharmmNonBonded
- getSolventAtomDescriptorList()
: BALL::SolventDescriptor
- getSolventDC()
: BALL::GeneralizedBornModel::GBParameters
- getSolventDensity()
: BALL::SolventParameter
- getSolventDescription()
: BALL::SolventParameter
- getSolventDescriptor()
: BALL::SolventParameter
, BALL::Pair6_12InteractionEnergyProcessor
- getSolventName()
: BALL::SolventParameter
- getSource()
: BALL::EdgeItem< Node, Edge >
- getSP2Plane_()
: BALL::VIEW::AddBallAndStickModel
- getSpacing()
: BALL::TRegularData1D< ValueType >
, BALL::TRegularData2D< ValueType >
, BALL::Spectrum< DataT, PeakT, PositionT >
, BALL::TContourSurface< T >::Cube
, BALL::TRegularData3D< ValueType >
- getSPAtom()
: BALL::SmartsParser::SPNode
- getSPBond()
: BALL::SmartsParser::SPEdge
- getSpecularIntensity()
: BALL::VIEW::Stage
- getSphere()
: BALL::ReducedSurface
, BALL::SASFace
- getSpheres()
: BALL::SurfaceProcessor
- getSquareDistance()
: BALL::TVector3< T >
, BALL::TVector4< T >
, BALL::TVector2< T >
- getSquareLength()
: BALL::TVector2< T >
, BALL::TVector3< T >
, BALL::TVector4< T >
, BALL::VIEW::Tube
- getSSSR()
: BALL::SDGenerator
- getStackPages()
: BALL::VIEW::PreferencesEntry
- getStage()
: BALL::VIEW::SceneMessage
, BALL::VIEW::Renderer
, BALL::VIEW::Scene
, BALL::VIEW::SceneMessage
, BALL::VIEW::Scene
- getStartPosition()
: BALL::RSComputer
- getStartSnapshot()
: BALL::VIEW::SnapshotVisualisationDialog
- getStartupLog()
: BALL::PyInterpreter
- getStatus()
: BALL::ResidueChecker
- getStatusbarText()
: BALL::VIEW::MainControl
- getStatusCode()
: BALL::TCPTransfer
- getStepsBetweenRefreshs()
: BALL::VIEW::MolecularDynamicsDialog
- getStereoMode()
: BALL::VIEW::GLRenderer
- getStickRadius()
: BALL::VIEW::AddBallAndStickModel
- getStickStickRadius()
: BALL::VIEW::ModelSettingsDialog
- getStrandColor()
: BALL::VIEW::SecondaryStructureColorProcessor
- getStrandHeight()
: BALL::VIEW::AddCartoonModel
- getStrandWidth()
: BALL::VIEW::AddCartoonModel
- getStream()
: BALL::VIEW::FetchHTMLThread
, BALL::TCPTransfer
- getStretchBendEnergy()
: BALL::MMFF94StretchBend
, BALL::MMFF94
- getStretchBends()
: BALL::MMFF94StretchBend
- getStretchEnergy()
: BALL::CharmmFF
, BALL::AmberFF
, BALL::MMFF94StretchBend
, BALL::MMFF94
- getStretches()
: BALL::MMFF94StretchBend
- getStretchParameters()
: BALL::MMFF94
- getString()
: BALL::NamedProperty
- getString_()
: BALL::VIEW::CompositeProperties
- getStringToWildcard()
: BALL::GAFFCESParser::CESPredicate
- getStyle()
: BALL::VIEW::MainControlPreferences
- getSubstring()
: BALL::String
- getSuffix_()
: BALL::FragmentDB::NormalizeNamesProcessor
- getSulfurTypes_()
: BALL::GAFFTypeProcessor
- getSuperAtomContainer()
: BALL::AtomContainer
, BALL::Molecule
, BALL::AtomContainer
- getSupportedFileFormats()
: BALL::VIEW::MolecularFileDialog
, BALL::VIEW::DatasetController
- getSupportedFileFormatsList()
: BALL::VIEW::MolecularFileDialog
- getSupportedResolution()
: BALL::VIEW::BufferedRenderer
- getSurface()
: BALL::TSimpleBox3< T >
, BALL::NumericalSAS
, BALL::SurfaceProcessor
, BALL::TBox3< T >
- getSurfaceDrawingPrecision()
: BALL::VIEW::Representation
, BALL::VIEW::ModelProcessor
- getSurfaceMap()
: BALL::NumericalSAS
- getSurfacePerAtom()
: BALL::NumericalSAS
- getSurfaceProbeRadius()
: BALL::VIEW::ModelSettingsDialog
- getSwapEndian()
: BALL::BinaryFileAdaptor< T >
- getSybylType_()
: BALL::MOL2File
- getSymbol()
: BALL::Element
, BALL::ConnectedToPredicate::CTPNode
- getSyntaxTree()
: BALL::ExpressionParser
- getSysPath()
: BALL::PyInterpreter
- getSystem()
: BALL::Molecule
, BALL::VIEW::SDWidget
, BALL::ConformationSet
, BALL::SmilesParser
, BALL::VIEW::FDPBDialog
, BALL::ConformationSet
, BALL::SnapShotManager
, BALL::ForceField
, BALL::Molecule
, BALL::ForceField
- getSystem1()
: BALL::VIEW::DockDialog
- getSystem2()
: BALL::VIEW::DockDialog
- getSystemTime()
: BALL::Timer
- getTarget()
: BALL::EdgeItem< Node, Edge >
, BALL::NotificationTarget_
- getTCPTransfer()
: BALL::VIEW::FetchHTMLThread
- getTemperature()
: BALL::VIEW::MolecularDynamicsDialog
, BALL::MolecularDynamics
, BALL::HINFile
- getTemperatureFactor()
: BALL::PDBAtom
- getText()
: BALL::VIEW::LabelModel
, BALL::VIEW::Label
- getTexture()
: BALL::VIEW::GridVisualisation
- getTextureIndex_()
: BALL::VIEW::GLRenderer
- getTextureUpDirection_()
: BALL::VIEW::StageSettings
- getThreshold()
: BALL::VIEW::ContourSurfaceDialog
- getTime()
: BALL::TimeStamp
, BALL::MolecularDynamics
- getTimeStep()
: BALL::VIEW::MolecularDynamicsDialog
, BALL::MolecularDynamics
- getTimestep()
: BALL::TRRFile
- getTolerance()
: BALL::VIEW::FieldLinesDialog
- getTorsionEnergy()
: BALL::MMFF94
, BALL::CharmmFF
, BALL::AmberFF
- getTorsionPhi()
: BALL::ResidueRotamerSet
, BALL::Residue
- getTorsionPsi()
: BALL::Residue
, BALL::ResidueRotamerSet
- getTorsions()
: BALL::MMFF94Torsion
- getTorsionType()
: BALL::MMFF94Torsion
- getTotalArea()
: BALL::NumericalSAS
- getTotalCharge()
: BALL::AssignBondOrderProcessor
, BALL::AssignChargeProcessor
- getTotalCharge_()
: BALL::AssignBondOrderProcessor
- getTotalEnergy()
: BALL::MolecularDynamics
- getTotalPenalty()
: BALL::AssignBondOrderProcessor
- getTotalPenalty_()
: BALL::AssignBondOrderProcessor
- getTotalVolume()
: BALL::NumericalSAS
- getTrace()
: BALL::TMatrix4x4< T >
- getTraits()
: BALL::BaseIterator< Container, DataType, Position, Traits >
- getTrajectoryFile()
: BALL::SnapShotManager
- getTransform()
: BALL::VIEW::MotionTrackingEvent
, BALL::VIEW::HeadTrackingEvent
- getTransformation()
: BALL::TransformationProcessor
- getTransformationManager()
: BALL::File
- getTranslation()
: BALL::TranslationProcessor
, BALL::VIEW::TransformationEvent6D
, BALL::GeometricFit
- getTranslation_()
: BALL::GeometricFit
- getTranslationVector_()
: BALL::VIEW::Scene
- getTransparency()
: BALL::VIEW::ColorProcessor
, BALL::VIEW::Representation
- getTriangle()
: BALL::TSurface< T >
, BALL::TriangleEdge
, BALL::TSurface< T >
- getTripleProduct()
: BALL::TVector3< T >
- getTubeRadius()
: BALL::VIEW::ModelSettingsDialog
, BALL::VIEW::AddBackboneModel
- getTurnColor()
: BALL::VIEW::SecondaryStructureColorProcessor
- getTurnPoint()
: BALL::VIEW::Scene
- getTwoReferenceAtoms()
: BALL::ReconstructFragmentProcessor
- getType()
: BALL::SurfaceProcessor
, BALL::NamedProperty
, BALL::VIEW::CompositeMessage
, BALL::VIEW::RepresentationMessage
, BALL::File
, BALL::VIEW::LightSource
, BALL::VIEW::AddSurfaceModel
, BALL::VIEW::DatasetController
, BALL::AtomTypes
, BALL::SESFace
, BALL::Bond
, BALL::SESEdge
, BALL::VIEW::Dataset
, BALL::File
, BALL::SmartsParser::SPAtom::Property
, BALL::ExpressionTree
, BALL::VIEW::LabelModel
, BALL::VIEW::SceneMessage
, BALL::MolecularInformation
, BALL::Peptides::AminoAcidDescriptor
, BALL::VIEW::MolecularTaskMessage
, BALL::VIEW::DatasetControl
, BALL::VIEW::DatasetMessage
, BALL::VersionInfo
, BALL::SecondaryStructure
, BALL::Atom
- getType_()
: BALL::MolecularInformation
- getTypeMap()
: BALL::ScoringTypes
- getTypeName()
: BALL::AtomTypes
, BALL::MolecularInformation
, BALL::Atom
, BALL::Templates
- getTypeName_()
: BALL::MolecularInformation
- getU_()
: BALL::MMFF94Torsion
- getUCK()
: BALL::UCK
- getUnassignedAtoms()
: BALL::Templates
, BALL::AssignBaseProcessor
, BALL::ForceField
, BALL::ScoringFunction
, BALL::MMFF94ChargeProcessor
, BALL::ScoringFunction
- getUnassignedBonds()
: BALL::Kekuliser
- getUnit()
: BALL::HashGrid3< Item >
, BALL::TVector4< T >
, BALL::TVector3< T >
, BALL::TVector2< T >
, BALL::Descriptor
- getUnscoredConformations()
: BALL::ConformationSet
- getUnsignedChar()
: BALL::BitVector
- getUnsignedInt()
: BALL::NamedProperty
, BALL::BitVector
- getUnsignedLong()
: BALL::BitVector
- getUnsignedShort()
: BALL::BitVector
- getUpdateFrequency()
: BALL::MMFF94
, BALL::AmberFF
, BALL::ForceField
- getUpdateMethod()
: BALL::ConjugateGradientMinimizer
, BALL::ShiftedLVMMMinimizer
- getUpdateTime()
: BALL::ForceField
- getUpper()
: BALL::BoundingBoxProcessor
- getURL()
: BALL::VIEW::ShowHelpMessage
, BALL::VIEW::RegisterHelpSystemMessage
- getUseConjugateGradient()
: BALL::VIEW::MinimizationDialog
- getUser2ScreenDistance_()
: BALL::VIEW::StageSettings
- getUserEyeDistance_()
: BALL::VIEW::StageSettings
- getUserEyeLevel_()
: BALL::VIEW::StageSettings
- getUserHomeDir()
: BALL::Directory
- getUserTime()
: BALL::Timer
- getUseSelection()
: BALL::ForceField
- getUseShiftedLVMM()
: BALL::VIEW::MinimizationDialog
- getUseStrangLBFGS()
: BALL::VIEW::MinimizationDialog
- getV_()
: BALL::MMFF94Torsion
- getValue()
: BALL::NumericalIntegrator< Function, DataType >
, BALL::ResourceFile
, BALL::VIEW::ColorHSV
, BALL::ResourceEntry
, BALL::VIEW::HotkeyTable
, BALL::ResourceEntry
, BALL::ParameterSection
, BALL::SmartsParser::SPAtom::Property
, BALL::VIEW::ShortcutRegistry
, BALL::INIFile
, BALL::VIEW::PreferencesEntry::ExtendedPreferencesObject
, BALL::ResourceFile
, BALL::VIEW::QColorTable
, BALL::PreferencesObject
, BALL::PluginManager
, BALL::ParameterSection
, BALL::VIEW::ColorHSV
- getValue_()
: BALL::VIEW::AmberConfigurationDialog
, BALL::VIEW::RaytraceableContourSurfaceDialog
, BALL::VIEW::PreferencesEntry
, BALL::VIEW::MMFF94ConfigurationDialog
, BALL::VIEW::AssignBondOrderConfigurationDialog
, BALL::VIEW::CharmmConfigurationDialog
, BALL::VIEW::RaytraceableContourSurfaceDialog
, BALL::VIEW::CharmmConfigurationDialog
, BALL::VIEW::MMFF94ConfigurationDialog
, BALL::VIEW::AssignBondOrderConfigurationDialog
, BALL::VIEW::AmberConfigurationDialog
- getValues_()
: BALL::VIEW::LightSettings
- getVanDerWaalsRadius()
: BALL::Element
- getVariantNames()
: BALL::FragmentDB
- getVdwEnergy()
: BALL::AmberNonBonded
- getVDWEnergy()
: BALL::MMFF94NonBonded
- getVdWEnergy()
: BALL::MMFF94
, BALL::AmberFF
, BALL::CharmmFF
- getVdwEnergy()
: BALL::CharmmNonBonded
- getVDWRadiusFactor()
: BALL::VIEW::ModelSettingsDialog
, BALL::VIEW::AddVanDerWaalsModel
- getVDWScore()
: BALL::SLICKEnergy
, BALL::SLICKScore
- getVector()
: BALL::Options
- getVelocity()
: BALL::Atom
- getVendor()
: BALL::VIEW::GLRenderer
- getVersion()
: BALL::VersionInfo
, BALL::PDBFile
- getVertex()
: BALL::VIEW::Vertex
, BALL::GraphEdge< Vertex, Edge, Face >
, BALL::SolventAccessibleSurface
, BALL::TSurface< T >
, BALL::VIEW::Vertex
, BALL::ReducedSurface
, BALL::GraphTriangle< Vertex, Edge, Face >
, BALL::VIEW::Vertex
, BALL::TSurface< T >
, BALL::VIEW::Vertex
- getVertex1()
: BALL::VIEW::Vertex2
- getVertex1Address()
: BALL::VIEW::Vertex2
- getVertex2()
: BALL::VIEW::Vertex2
- getVertex2Address()
: BALL::VIEW::Vertex2
- getVertexAddress()
: BALL::VIEW::Vertex
- getVertices()
: BALL::VIEW::Point
, BALL::VIEW::Box
, BALL::VIEW::GeometricObject
, BALL::VIEW::TwoColoredTube
, BALL::VIEW::Sphere
, BALL::VIEW::Mesh
, BALL::VIEW::QuadMesh
, BALL::VIEW::Vertex2
, BALL::VIEW::SimpleBox
, BALL::VIEW::MultiLine
, BALL::VIEW::Disc
, BALL::VIEW::TwoColoredLine
, BALL::VIEW::Line
, BALL::VIEW::Label
, BALL::VIEW::Vertex2
, BALL::VIEW::Tube
- getViewPoint()
: BALL::VIEW::Camera
- getViewVector()
: BALL::VIEW::Camera
- getVirtualNotificationType()
: BALL::NotificationTarget1< NotificationSource, T1 >
- getVirtualNotificationType_()
: BALL::NotificationTarget2< NotificationSource, T1, T2 >
, BALL::NotificationTarget< NotificationSource >
- getVisitedBonds()
: BALL::RingFinder
- getVolume()
: BALL::TSimpleBox3< T >
, BALL::TBox3< T >
- getWeight()
: BALL::UCK
- getWidth()
: BALL::VIEW::FrameBufferFormat
, BALL::TSimpleBox3< T >
, BALL::CreateSpectrumProcessor
, BALL::TBox3< T >
, BALL::Peak< PositionType >
, BALL::VIEW::Renderer
- getWildcards()
: BALL::GAFFCESParser::CESwildcardsPredicate
, BALL::GAFFCESParser::CESwildcardsConnectionPredicate
- getWorkingDir()
: BALL::VIEW::MainControl
, BALL::VIEW::ModularWidget
- getXAng()
: BALL::GeometricFit::RotationAngles_
- getXDiff_()
: BALL::VIEW::Scene
- getXScale()
: BALL::VIEW::GLRenderer
- getXTol()
: BALL::LineSearch
- getYAng()
: BALL::GeometricFit::RotationAngles_
- getYDiff_()
: BALL::VIEW::Scene
- getYScale()
: BALL::VIEW::GLRenderer
- getZAng()
: BALL::GeometricFit::RotationAngles_
- getZero()
: BALL::TVector2< T >
, BALL::TVector3< T >
, BALL::TVector4< T >
, BALL::TMatrix4x4< T >
- getZEType()
: BALL::SmartsParser::SPBond
, BALL::SmilesParser::SPBond
- GLDisplayList()
: BALL::VIEW::GLDisplayList
- gln_pressed()
: BALL::VIEW::PeptideDialog
- GlobalExceptionHandler()
: BALL::Exception::GlobalExceptionHandler
- GlobalInitializer()
: BALL::GlobalInitializer
- GLOffscreenTarget()
: BALL::VIEW::GLOffscreenTarget
- GLRenderer()
: BALL::VIEW::GLRenderer
- GLRenderWindow()
: BALL::VIEW::GLRenderWindow
- glu_pressed()
: BALL::VIEW::PeptideDialog
- gly_pressed()
: BALL::VIEW::PeptideDialog
- gotoLine()
: BALL::LineBasedFile
- Gradient()
: BALL::Gradient
- GraphEdge()
: BALL::GraphEdge< Vertex, Edge, Face >
- GraphFace()
: BALL::GraphFace< Vertex, Edge, Face >
- GraphTriangle()
: BALL::GraphTriangle< Vertex, Edge, Face >
- GraphVertex()
: BALL::GraphVertex< Vertex, Edge, Face >
- gridSelected()
: BALL::VIEW::GridVisualizationDialog
, BALL::VIEW::ModifyRepresentationDialog
- gridTransparencyChanged()
: BALL::VIEW::GridVisualizationDialog
, BALL::VIEW::ModifyRepresentationDialog
- GridVisualisation()
: BALL::VIEW::GridVisualisation
- GridVisualizationDialog()
: BALL::VIEW::GridVisualizationDialog