Class List

Here are the classes, structs, unions and interfaces with brief descriptions:
BALL::VIEW::AddBackboneModel
BALL::VIEW::AddBallAndStickModel
BALL::VIEW::AddCartoonModel
BALL::AddHydrogenProcessor
BALL::Addition< First, Second, DataType >
BALL::PDB::AdditionalAtomInfo
BALL::VIEW::AddLineModel
BALL::VIEW::AddSurfaceModel
BALL::VIEW::AddVanDerWaalsModel
BALL::AssignBondOrderProcessor::Algorithm
BALL::AmberBend
BALL::VIEW::AmberConfigurationDialog
BALL::AmberEvaluation
BALL::AmberFF
BALL::AmberNonBonded
BALL::AmberStretch
BALL::AmberTorsion
BALL::Peptides::AminoAcidDescriptor
BALL::Composite::AncestorIteratorTraits
BALL::VIEW::AnimationThread
BALL::AnisotropyShiftProcessor
BALL::VIEW::AtomOverview::ApplyProcessor
BALL::GAFFCESParser::APSMatcher
BALL::GAFFCESParser::APSMatcher::APSTerm
BALL::AromaticBondsPredicate
BALL::AromaticityProcessor
BALL::CHPI::AromaticRing
BALL::AromaticRingStacking
BALL::MMFF94AtomTyper::AromaticType
BALL::AssignBaseProcessorOnly used for deriving interface
BALL::VIEW::AssignBondOrderConfigurationDialog
BALL::AssignBondOrderProcessor
BALL::VIEW::AssignBondOrderResultsDialog
BALL::AssignChargeProcessor
BALL::AssignRadiusProcessor
BALL::AssignShiftProcessor
BALL::AssignTypeNameProcessor
BALL::AssignTypeProcessor
BALL::Atom
BALL::AtomBijection
BALL::VIEW::AtomBondModelBaseProcessor
BALL::VIEW::AtomChargeColorProcessor
BALL::AtomContainer
BALL::AtomContainerIteratorTraits
BALL::VIEW::AtomDistanceColorProcessor
BALL::PDB::Structure::AtomEntry
BALL::AtomicPolarizabilities
BALL::Kekuliser::AtomInfo
BALL::AtomInformationContent
BALL::AtomIteratorTraits
BALL::AtomNamePredicate
BALL::HybridisationProcessor::AtomNames_
BALL::VIEW::AtomOverview
BALL::MOL2File::AtomStruct
BALL::MOLFile::AtomStruct
BALL::AtomTypePredicate
BALL::AtomTyper
BALL::AtomTypes
BALL::AtomVector
BALL::Atom::AttributeVector
BALL::AutoDeletable
BALL::MicroCanonicalMD::AuxFactors
BALL::CanonicalMD::AuxFactorsHelper class containing auxiliary factors
BALL::AxialPredicate
BALL::BackBonePredicate
BALL::BalabanIndexJ
BALL_DEFAULT_MUTEX_TYPE
BALL_MAP_NAME
BALL::BALLPlugin
BALL::VIEW::BALLThread
BALL::VIEW::ServerWidget::BALLViewServer
BALL::BaseIterator< Container, DataType, Position, Traits >
BALL::MMFF94StretchBend::BendSee MMFFANG.PAR
BALL::BidirectionalIterator< Container, DataType, Position, Traits >Mutable bidirectional iterator
binary_function
BALL::BinaryFileAdaptor< T >
BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >
BALL::BinaryPredicate< T1, T2 >
BALL::BinaryProcessor< T1, T2 >
BALL::BindingPocketProcessor
BALL::Bit
BALL::BitVector
BALL::GAMESSDatFile::block
BALL::TRegularData3D< ValueType >::BlockValueTypeThe block data type for reading and writing binary data
BALL::TRegularData2D< ValueType >::BlockValueTypeThe block data type for reading and writing binary data
BALL::TRegularData1D< ValueType >::BlockValueTypeThe block data type for reading and writing binary data
BALL::Bond
BALL::MMFF94StretchParameters::BondData
BALL::Atom::BondIteratorTraits
BALL::BondPolarizabilities
BALL::VIEW::BondProperties
BALL::MOL2File::BondStruct
BALL::MOLFile::BondStruct
BALL::PDB::BookKeeping
BALL::FDPB::Boundary
BALL::BoundingBoxProcessor
BALL::VIEW::Box
BALL::HashGridBox3< Item >::BoxIteratorTraits
BALL::HashGrid3< Item >::BoxIteratorTraits
BALL::Bruker1DFile
BALL::Bruker2DFile
BALL::VIEW::BufferedRenderer
BALL::Exception::BufferOverflow
BALL::BuildBondsProcessor
BALL::FragmentDB::BuildBondsProcessor
BALL::BuriedPolar
BALL::VIEW::ButtonEvent
BALL::VIEW::CalculateFDPBThread
BALL::VIEW::Camera
BALL::File::CannotWrite
BALL::CanonicalMD
BALL::VIEW::CanvasWidget
BALL::GAFFCESParser::CESelementConnectionPredicate
BALL::GAFFCESParser::CESelementPredicate
BALL::GAFFCESParser::CESPredicate
BALL::GAFFCESParser::CESwildcardsConnectionPredicate
BALL::GAFFCESParser::CESwildcardsPredicate
BALL::Chain
BALL::ChainBuilderThis class provides methods for analysis of the chains in a molecule
BALL::VIEW::ChainColorProcessor
BALL::ChainIteratorTraits
BALL::ChainPredicate
BALL::VIEW::ChannelFormat
BALL::FDPB::ChargeDistribution
BALL::ChargePredicate
BALL::ChargeRuleProcessor
BALL::CharmmBend
BALL::VIEW::CharmmConfigurationDialog
BALL::CharmmEEF1
BALL::CharmmFF
BALL::CharmmImproperTorsion
BALL::CharmmNonBonded
BALL::CharmmStretch
BALL::CharmmTorsion
BALL::ChemScoreMetal
BALL::CHPI::CHGroup
BALL::Composite::ChildCompositeIteratorTraits
BALL::CHPI
BALL::ClaverieParameter
BALL::ClearChargeProcessor
BALL::ClearRadiusProcessor
BALL::ClearShiftProcessor
BALL::Client
BALL::VIEW::ClippingDialog
BALL::VIEW::ClippingPlane
BALL::VIEW::ColorExtension2
BALL::VIEW::ColorHSV
BALL::VIEW::ColoringSettingsDialog
BALL::VIEW::ColorMap
BALL::VIEW::ColorProcessor
BALL::VIEW::ColorRGBA
BALL::VIEW::ColorUnit
BALL::VIEW::ColorUnitHue
BALL::VIEW::ComboBoxDelegate
BALL::Comparator< T >
BALL::DockResult::Compare_
BALL::VIEW::DockResultDialog::Compare_
BALL::ComposedEnergyProcessor
BALL::Composite
BALL::Composite::CompositeIteratorTraits
BALL::CompositeIteratorTraits
BALL::VIEW::CompositeManager
BALL::VIEW::CompositeMessage
BALL::VIEW::CompositeProperties
BALL::PDB::Structure::ConectAtomList
BALL::Conformation4C1Predicate
BALL::ConformationSet
BALL::ConjugateGradientMinimizer
BALL::ConnectedToPredicate
BALL::FragmentDB::BuildBondsProcessor::Connection
BALL::VIEW::ConnectionObject
BALL::ConnectivityBase
BALL::Constant
BALL::ConstantFunction< constant_template >
BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >
BALL::ConstForwardIterator< Container, DataType, Position, Traits >
BALL::ConstRandomAccessIterator< Container, DataType, Position, Traits >
BALL::VIEW::ContourSurfaceDialog
BALL::VIEW::ControlSelectionMessage
BALL::CosineTorsion
BALL::MOLFile::CountsStruct
BALL::VIEW::CreateRepresentationMessage
BALL::CreateSpectrumProcessor
BALL::ConnectedToPredicate::CTPNode
BALL::TContourSurface< T >::Cube
BALL::CubicFunction< Function, DataType >
BALL::Exception::CUDAError
BALL::VIEW::CustomColorProcessor
BALL::CharmmEEF1::Data
BALL::CosineTorsion::Data
BALL::LennardJones::Data
BALL::Potential1210::Data
BALL::QuadraticAngleBend::Data
BALL::QuadraticBondStretch::Data
BALL::QuadraticImproperTorsion::Data
BALL::ResidueTorsions::Data
BALL::HashGridBox3< Item >::DataItem?????
BALL::HashGridBox3< Item >::DataIteratorTraits
BALL::VIEW::Dataset
BALL::VIEW::DatasetControl
BALL::VIEW::DatasetController
BALL::VIEW::DatasetMessage
BALL::DCDFile
BALL::AromaticityProcessor::DefaultDefault values for options
BALL::RingPerceptionProcessor::DefaultDefault options for the ring perception
BALL::VIEW::SDWidget::DefaultDefault values for options
BALL::ScoringFunction::Default
BALL::AromaticRingStacking::Default
BALL::BuriedPolar::Default
BALL::CHPI::Default
BALL::HydrogenBond::Default
BALL::Lipophilic::Default
BALL::NonpolarSolvation::Default
BALL::PolarSolvation::Default
BALL::RotationalEntropyLoss::Default
BALL::VanDerWaals::Default
BALL::SLICKEnergy::Default
BALL::SLICKScore::Default
BALL::ElectrostaticPotentialCalculator::Default
BALL::GeneralizedBornModel::Default
BALL::Pair6_12InteractionEnergyProcessor::Default
BALL::Pair6_12RDFIntegrator::Default
BALL::PairExpInteractionEnergyProcessor::Default
BALL::PairExpRDFIntegrator::Default
BALL::PierottiCavFreeEnergyProcessor::Default
BALL::PCMCavFreeEnergyProcessor::Default
BALL::FDPB::Default
BALL::ReissCavFreeEnergyProcessor::Default
BALL::UhligCavFreeEnergyProcessor::Default
BALL::AssignBondOrderProcessor::DefaultDefault values for options
BALL::BindingPocketProcessor::Default
BALL::BuildBondsProcessor::DefaultDefault values for options
BALL::GeometricFit::Default
BALL::HybridisationProcessor::DefaultDefault values for options
BALL::AmberFF::Default
BALL::NumericalSAS::Default
BALL::SDGenerator::DefaultDefault values for options
BALL::GAFFTypeProcessor::Default
BALL::CharmmFF::Default
BALL::PeriodicBoundary::DefaultDefault values
BALL::SnapShotManager::DefaultLocal class for handling default values for the options
BALL::MolecularDynamics::Default
BALL::ConjugateGradientMinimizer::Default
BALL::EnergyMinimizer::Default
BALL::ShiftedLVMMMinimizer::Default
BALL::StrangLBFGSMinimizer::Default
BALL::MMFF94::Default
BALL::PDBFile::Default
BALL::VIEW::DemoTutorialDialog
BALL::Density
BALL::Descriptor
BALL::VIEW::DeselectControlsMessage
BALL::VIEW::DeviceEvent
BALL::FDPB::DielectricSmoothing
BALL::Directory
BALL::VIEW::Disc
BALL::VIEW::GLDisplayList::DisplayListRedeclaration
BALL::VIEW::DisplayProperties
BALL::Division< First, Second, DataType >
BALL::Exception::DivisionByZero
BALL::DNAMutator
BALL::VIEW::DockableRegularData1DWidget
BALL::VIEW::DockableRegularData2DWidget
BALL::VIEW::DockDialog
BALL::DockingAlgorithm
BALL::VIEW::DockingController
BALL::VIEW::DockingFinishedMessageMessage to notify docking has finished
BALL::VIEW::DockingThreadThread for Docking
BALL::VIEW::DockProgressDialog
BALL::DockResult
BALL::VIEW::DockResultController
BALL::VIEW::DockResultDialog
BALL::VIEW::DockWidget
BALL::DoubleBondsPredicate
BALL::DoubleTraits
BALL::VIEW::DownloadPDBFile
BALL::VIEW::DragLogView
BALL::DSN6File
BALL::EdgeItem< Node, Edge >
BALL::VIEW::EditableScene
BALL::VIEW::EditFunctions
BALL::VIEW::EditableScene::EditOperation
BALL::VIEW::EditOperationDialog
BALL::VIEW::EditSettings
BALL::VIEW::EditSingleShortcut
BALL::EFShiftProcessor
BALL::ElectrostaticPotentialCalculator
BALL::Element
BALL::VIEW::ElementColorProcessor
BALL::ElementPredicate
BALL::HybridisationProcessor::Elements_
BALL::Embeddable
BALL::MMFF94StretchParameters::EmpiricalBondData
BALL::PDB::RecordDBREF::EndingDatabaseSegment
BALL::PDB::RecordDBREF::EndingSequence
BALL::EnergeticEvaluation
BALL::EnergyMinimizer
BALL::VIEW::EnergyMinimizerThreadThread for EnergyMinimization
BALL::EnergyProcessor
BALL::Enumerator< Container, SiteIterator, Variant >
BALL::EnumeratorIndex
BALL::Experiment< PeakListType >
BALL::VIEW::ExportGeometryDialog
BALL::Expression
BALL::ExpressionParser
BALL::ExpressionPredicate
BALL::ExpressionTree
BALL::VIEW::PreferencesEntry::ExtendedPreferencesObject
BALL::TriangulatedSphere::Face
BALL::Factory< T >
BALL::VIEW::FakeDriver
BALL::FalsePredicate
BALL::FDPB::FastAtomStruct
BALL::FDPB
BALL::VIEW::FDPBDialog
BALL::FermiBaseFunction
BALL::VIEW::FetchHTMLThread
BALL::VIEW::FieldLineCreator
BALL::VIEW::FieldLinesDialog
FieldLinesDialogData
BALL::File
BALL::Exception::FileNotFound
BALL::VIEW::FileObserver
BALL::FileSystem
BALL::VIEW::FinishedSimulationMessage
BALL::FloatTraits
BALL::VIEW::ForceColorProcessor
BALL::ForceField
BALL::ForceFieldComponent
BALL::ForceFieldEvaluation
BALL::ForceFieldParameters
BALL::VIEW::ForceModel
BALL::FormalCharge
BALL::Exception::FormatUnsupported
BALL::ForwardIterator< Container, DataType, Position, Traits >
BALL::Fragment
BALL::FragmentDB
BALL::FragmentDistanceCollector
BALL::FragmentIteratorTraits
BALL::VIEW::FrameBuffer
BALL::VIEW::FrameBufferFormat
BALL::FresnoTypes
BALL::GAFFCESParser
BALL::GAFFTypeProcessor
BALL::GAMESSDatFile
BALL::GAMESSLogFile
BALL::GeneralizedBornModel::GBParameters
BALL::Exception::GeneralException
BALL::GeneralizedBornModel
BALL::VIEW::GenericControl
BALL::GenericMolFile
BALL::VIEW::GenericSelectionMessage
BALL::GeometricCenterProcessor
BALL::VIEW::GeometricControl
BALL::GeometricFit
BALL::VIEW::GeometricFitDialog
BALL::VIEW::GeometricObject
BALL::VIEW::GeometricObjectSelectionMessage
BALL::VIEW::GLDisplayList
BALL::Exception::GlobalExceptionHandler
BALL::GlobalInitializer
BALL::VIEW::GLOffscreenTarget
BALL::VIEW::GLRenderer
BALL::VIEW::GLRenderWindow
BALL::Gradient
BALL::GraphEdge< Vertex, Edge, Face >
BALL::GraphFace< Vertex, Edge, Face >
BALL::GraphTriangle< Vertex, Edge, Face >
BALL::GraphVertex< Vertex, Edge, Face >
BALL::ConnectedToPredicate::CTPNode::greater_
BALL::VIEW::GridVisualisation
BALL::VIEW::GridVisualizationDialog
BALL::HaighMallionShiftProcessor
BALL::HashFunction< T >
BALL::HashGrid3< Item >
BALL::HashGridBox3< Item >
BALL::HashMap< Key, T >HashMap class based on the STL map (containing serveral convenience functions)
BALL::HashSet< Key >
BALL::VIEW::HBondModelProcessor
BALL::HBondProcessor
BALL::HBondShiftProcessor
BALL::VIEW::HeadTrackingEvent
BALL::VIEW::HelpViewer
BALL::AssignBondOrderProcessor::Heuristic
BALL::HINFile
BALL::VIEW::Hotkey
BALL::VIEW::HotkeyTable
BALL::HybridisationProcessor
BALL::PDB::RecordHYDBND::HydrogenAtom
BALL::HydrogenBond
BALL::PDB::RecordHYDBND::HydrogenPartnerAtom
BALL::HydrophobicVdWSurface
BALL::HashMap< Key, T >::IllegalKeyHashMap illegal key exception
BALL::HashSet< Key >::IllegalKey
BALL::Bit::IllegalOperation
BALL::Exception::IllegalPosition
BALL::Exception::IllegalSelfOperation
BALL::Exception::IllegalTreeOperation
BALL::RMSDMinimizer::IncompatibleCoordinateSets
BALL::EnumeratorIndex::IncompatibleIndex
BALL::Exception::IncompatibleIterators
BALL::Exception::IndexOverflow
BALL::TRegularData2D< ValueType >::IndexTypeThe index type used to refer to a specific element in the grid (x-, and y-index)
BALL::TRegularData3D< ValueType >::IndexTypeThe index type used to refer to a specific element in the grid (x-, y-, and z-index)
BALL::Exception::IndexUnderflow
BALL::INIFile
BALL::PDB::RecordDBREF::InitialDatabaseSegment
BALL::PDB::RecordDBREF::InitialSequence
BALL::VIEW::InputDeviceDriver
BALL::VIEW::InputDevPluginHandler
BALL::VIEW::InputPlugin
BALL::InRingPredicate
BALL::VIEW::InterpolateColorProcessor
BALL::Exception::InvalidArgument
BALL::Client::InvalidClient
BALL::Exception::InvalidFormat
BALL::Exception::InvalidIterator
BALL::Exception::InvalidOptionException to be thrown if an invalid option is given
BALL::Exception::InvalidRange
BALL::Exception::InvalidSize
BALL::Substring::InvalidSubstring
iostream
BALL::HashSet< Key >::IteratorTraits
BALL::ResourceEntry::IteratorTraits_
BALL::Enumerator< Container, SiteIterator, Variant >::IteratorTraits_
BALL::INIFile::IteratorTraits_Interface for the LineIterator
BALL::JCAMPFile
BALL::JCAMPFile::JCAMPValue
BALL::JohnsonBoveyShiftProcessor
BALL::KCFFile
BALL::Kekuliser
BALL::KernelPredicate< T >Kernel predicate class
BALL::VIEW::Label
BALL::VIEW::LabelDialog
BALL::VIEW::LabelModel
BALL::LennardJones
BALL::VIEW::LightSettings
BALL::VIEW::LightSource
BALL::Limits< T >
BALL::Limits< bool >
BALL::Limits< char >
BALL::Limits< double >
BALL::Limits< float >
BALL::Limits< int >
BALL::Limits< long >
BALL::Limits< short >
BALL::Limits< signed char >
BALL::Limits< unsigned char >
BALL::Limits< unsigned int >
BALL::Limits< unsigned long >
BALL::Limits< unsigned short >
BALL::VIEW::Line
BALL::LinearBaseFunction
BALL::LineBasedFile
BALL::LineSearch
BALL::PDB::RecordLINK::LinkPartner
BALL::Lipophilic
BALL::List< Value >
BALL::VIEW::LogEventEvent class used for thread safe output to logview
BALL::LogStreamBuf::LoglineStruct
BALL::LogStream
BALL::LogStreamBuf
BALL::LogStreamNotifier
BALL::VIEW::LogView
BALL::LongDoubleTraits
BALL::VIEW::MainControl
BALL::VIEW::MainControlPreferences
BALL::Mainframe
BALL::VIEW::MaterialSettings
BALL::VIEW::MDSimulationThreadThread for MDSimulation
BALL::MeanAtomInformationContent
BALL::VIEW::Mesh
BALL::VIEW::MeshBuffer
BALL::VIEW::Message
BALL::VIEW::MessageEvent
BALL::HybridisationProcessor::Method
BALL::MicroCanonicalMD
BALL::VIEW::MinimizationDialog
BALL::MMFF94
BALL::MMFF94AtomTypeClass to store the values of an atom type from MMFFPROP.PAR
BALL::MMFF94AtomTypeEquivalences
BALL::MMFF94AtomTyper
BALL::MMFF94AtomTypes
BALL::MMFF94BendParameters
BALL::MMFF94ChargeProcessor
BALL::VIEW::MMFF94ConfigurationDialog
BALL::MMFF94ESParameters
BALL::MMFF94NonBonded
BALL::MMFF94OutOfPlaneBend
BALL::MMFF94ParametersBase
BALL::MMFF94PlaneParameters
BALL::MMFF94StretchBend
BALL::MMFF94StretchBendParameters
BALL::MMFF94StretchParameters
BALL::MMFF94Torsion
BALL::MMFF94TorsionParameters
BALL::MMFF94VDWParameters
BALL::VIEW::ModelInformation
BALL::VIEW::AddBackboneModel::ModelPart
BALL::VIEW::ModelProcessor
BALL::VIEW::ModelSettingsDialog
BALL::VIEW::ModifyRepresentationDialog
BALL::VIEW::ModularWidget
BALL::MOL2File
BALL::VIEW::MolecularControl
BALL::MolecularDynamics
BALL::VIEW::MolecularDynamicsDialog
BALL::VIEW::MolecularFileDialog
BALL::MolecularInformation
BALL::VIEW::MolecularStructure
BALL::VIEW::MolecularTaskMessage
BALL::MolecularWeight
BALL::Molecule
BALL::MoleculeAssemblerClass, providing methods for the assembly of a structure diagram
BALL::VIEW::MoleculeColorProcessor
BALL::MoleculeIteratorTraits
BALL::MoleculeObjectCreator
BALL::MoleculePredicate
BALL::MOL2File::MoleculeStruct
BALL::MOLFile
BALL::MolFileFactory
BALL::VIEW::MotionTrackingEvent
BALL::VIEW::MultiColorExtension
BALL::VIEW::MultiLine
BALL::MutableConstant< DataType >
BALL::MutablePower< Function, DataType >
MutexLockerType
BALL::VIEW::TestFramework::MyEventThread
BALL::VIEW::PyWidget::MyLineEdit
BALL::VIEW::TestFramework::MyMouseEvent
BALL::VIEW::MyTextBrowser
BALL::VIEW::PyWidget::MyTextEdit
BALL::VIEW::MolecularControl::MyTreeWidgetItem
BALL::NamedProperty
BALL::NegativePolarVdWSurface
BALL::NegativeVdWSurface
BALL::VIEW::GLDisplayList::NestedDisplayList
BALL::VIEW::NetworkPreferences
BALL::VIEW::NewSelectionMessage
BALL::NMRAtomData
BALL::NMRAtomDataSet
BALL::NMRStarFile
BALL::Exception::NoBufferAvailable
BALL::HashSet< Key >::Node
BALL::NodeItem< Node, Edge >
BALL::VIEW::GLDisplayList::NoDisplayListAvailable
BALL::FragmentDB::NoFragmentNode
BALL::MMFF94NonBonded::NonBondedPairData
BALL::NonpolarSolvation
BALL::Client::NoPersistentObject
BALL::FragmentDB::NormalizeNamesProcessor
BALL::Bond::NotBound
BALL::VIEW::ServerWidget::NotCompositeObject
BALL::NotificationManager_
BALL::NotificationSlot_
BALL::NotificationSource_
BALL::NotificationTarget< NotificationSource >
BALL::NotificationTarget1< NotificationSource, T1 >
BALL::NotificationTarget2< NotificationSource, T1, T2 >
BALL::NotificationTarget_
BALL::Exception::NotImplemented
BALL::VIEW::ColorUnit::NotInHexFormat
BALL::NucleicAcid
BALL::NucleicAcidIteratorTraits
BALL::NucleicAcidPredicate
BALL::Nucleotide
BALL::NucleotideIteratorTraits
BALL::NucleotidePredicate
BALL::Exception::NullPointer
BALL::NumberOfAromaticAtoms
BALL::NumberOfAromaticBonds
BALL::NumberOfAtoms
BALL::NumberOfBonds
BALL::NumberOfBondsPredicate
BALL::NumberOfBoron
BALL::NumberOfBromine
BALL::NumberOfCarbon
BALL::NumberOfChlorine
BALL::NumberOfDoubleBonds
BALL::NumberOfFlourine
BALL::NumberOfHeavyAtoms
BALL::NumberOfHeavyBonds
BALL::NumberOfHydrogen
BALL::NumberOfHydrogenBondAcceptors
BALL::NumberOfHydrogenBondDonors
BALL::NumberOfHydrophobicAtoms
BALL::NumberOfIodine
BALL::NumberOfNitrogen
BALL::NumberOfOxygen
BALL::NumberOfPhosphorus
BALL::NumberOfRotatableBonds
BALL::NumberOfRotatableSingleBonds
BALL::NumberOfSingleBonds
BALL::NumberOfSulfur
BALL::NumberOfTripleBonds
BALL::NumericalIntegrator< Function, DataType >
BALL::NumericalSAS
BALL::Object
BALL::ObjectCreator
BALL::VIEW::OccupancyColorProcessor
BALL::VIEW::OpenBruker1DFile
BALL::VIEW::OpenBruker2DFile
BALL::VIEW::OpenSavePreferences
BALL::AromaticityProcessor::OptionOption names
BALL::VIEW::SDWidget::OptionOption names
BALL::RingPerceptionProcessor::OptionOption names
BALL::PeriodicBoundary::Option
BALL::SnapShotManager::OptionLocal class for handling options
BALL::BuildBondsProcessor::OptionOption names
BALL::ScoringFunction::Option
BALL::AromaticRingStacking::Option
BALL::BuriedPolar::Option
BALL::CHPI::Option
BALL::HydrogenBond::Option
BALL::StrangLBFGSMinimizer::Option
BALL::NonpolarSolvation::Option
BALL::PolarSolvation::Option
BALL::RotationalEntropyLoss::Option
BALL::VanDerWaals::Option
BALL::SLICKEnergy::Option
BALL::SLICKScore::Option
BALL::ElectrostaticPotentialCalculator::Option
BALL::GeneralizedBornModel::Option
BALL::Pair6_12RDFIntegrator::Option
BALL::PairExpInteractionEnergyProcessor::Option
BALL::PairExpRDFIntegrator::Option
BALL::PCMCavFreeEnergyProcessor::Option
BALL::PierottiCavFreeEnergyProcessor::Option
BALL::HybridisationProcessor::OptionOption names
BALL::Lipophilic::Option
BALL::AssignBondOrderProcessor::OptionOption names
BALL::BindingPocketProcessor::Option
BALL::GeometricFit::Option
BALL::ReissCavFreeEnergyProcessor::Option
BALL::AmberFF::Option
BALL::NumericalSAS::Option
BALL::SDGenerator::OptionOption names
BALL::GAFFTypeProcessor::Option
BALL::CharmmFF::Option
BALL::MolecularDynamics::Option
BALL::ConjugateGradientMinimizer::Option
BALL::EnergyMinimizer::Option
BALL::ShiftedLVMMMinimizer::Option
BALL::MMFF94::Option
BALL::Pair6_12InteractionEnergyProcessor::Option
BALL::UhligCavFreeEnergyProcessor::Option
BALL::FDPB::Option
BALL::PDBFile::Option
BALL::Options
BALL::Exception::OutOfGrid
BALL::Exception::OutOfMemory
BALL::MMFF94OutOfPlaneBend::OutOfPlaneBend
BALL::Exception::OutOfRange
BALL::VIEW::AtomOverview::OverviewProcessor
BALL::Pair6_12InteractionEnergyProcessor
BALL::Pair6_12RDFIntegrator
BALL::PairExpInteractionEnergyProcessor
BALL::PairExpRDFIntegrator
BALL::Parameters
BALL::ParameterSection
BALL::ParsedFunction< arg >
BALL::VIEW::ParsedFunctionDialog
BALL::VIEW::PubChemDialog::ParsedResult_
BALL::Exception::ParseError
BALL::PartialChargeBase
BALL::PartialChargeProcessor
BALL::PDB::RecordSLTBRG::PartnerAtom
BALL::Path
BALL::RingPerceptionProcessor::PathMessage_
BALL::PCMCavFreeEnergyProcessor
BALL::PDBAtom
BALL::PDBAtomIteratorTraits
BALL::PDBFile
BALL::PDBInfo
BALL::PDBRecords
BALL::Peak< PositionType >
BALL::GeometricFit::Peak_
BALL::PeakList< PT >
BALL::Peptides::PeptideBuilder
BALL::VIEW::PeptideDialog
BALL::PeriodicBoundary
BALL::PersistenceManager
BALL::PersistentObject
BALL::PiecewiseFunction
BALL::PiecewisePolynomial
BALL::PierottiCavFreeEnergyProcessor
BALL::VIEW::PixelFormat
BALL::VIEW::CanvasWidget::PixmapItem
BALL::VIEW::PluginDialog
BALL::PluginHandler
BALL::PluginManager
BALL::VIEW::PluginModel
BALL::VIEW::Point
BALL::PolarSolvation
BALL::PolarVdWSurface
BALL::VIEW::PositionColorProcessor
BALL::PositivePolarVdWSurface
BALL::PositiveVdWSurface
BALL::Exception::Postcondition
BALL::Potential1210
BALL::VIEW::POVRenderer
BALL::VIEW::POVRenderer::POVRendererClippingPlane
BALL::AssignBondOrderProcessor::PQ_Entry_
BALL::PreciseTime
BALL::Exception::Precondition
BALL::VIEW::Preferences
BALL::VIEW::PreferencesEntry
BALL::PreferencesObject
BALL::PrincipalMomentOfInertia
BALL::PrincipalMomentOfInertiaX
BALL::PrincipalMomentOfInertiaY
BALL::PrincipalMomentOfInertiaZ
BALL::SESSingularityCleaner::ProbeIntersection
BALL::RSComputer::ProbePosition
BALL::Processor
BALL::Product< First, Second, DataType >
BALL::MOLFile::Property
BALL::SmartsParser::SPAtom::PropertyProperty struct of smarts parser atom
BALL::PropertyManager
BALL::SmartsParser::SPAtom::PropertyValuePossible types of the properties
BALL::Protein
BALL::ProteinIteratorTraits
BALL::ProteinPredicate
BALL::PTE_
BALL::VIEW::PTEDialog
BALL::VIEW::PubChemDialog
BALL::PyColorRGBAVector
BALL::PyCompositeList
BALL::PyDatasetVector
BALL::PyIndexList
BALL::PyInterpreter
BALL::VIEW::PythonHighlighter
BALL::VIEW::PythonSettings
BALL::VIEW::PyWidget
QAbstractListModel
QAbstractTableModel
QCanvasRectangle
QCanvasView
BALL::VIEW::QColorTable
QDialog
QDockWidget
QEvent
QGLWidget
QItemDelegate
QLineEdit
QMainWindow
QMouseEvent
QObject
QPaintDevice
QSyntaxHighlighter
QTableView
QTableWidget
QTextBrowser
QTextEdit
QThread
QTreeWidget
QTreeWidgetItem
BALL::VIEW::QuadMesh
BALL::QuadraticAngleBend
BALL::QuadraticBondStretch
BALL::QuadraticImproperTorsion
BALL::VIEW::QuadMesh::Quadruple
BALL::Quadruple< T1, T2, T3, T4 >
quaternion
QWidget
BALL::RadialDistributionFunction
BALL::RadiusRuleProcessor
BALL::RandomAccessIterator< Container, DataType, Position, Traits >
BALL::RandomCoilShiftProcessor
BALL::RandomEvaluation
BALL::RandomNumberGenerator
BALL::VIEW::RaytraceableContourSurfaceDialog
BALL::VIEW::RaytraceableGrid
BALL::VIEW::RaytraceableGridController
BALL::VIEW::Stage::RaytracingMaterial
BALL::RDFIntegrator
BALL::RDFParameter
BALL::RDFSection
ReadLockerType
ReadWriteLockType
BALL::Reciprocal< Function, DataType >
BALL::ReconstructFragmentProcessor
BALL::PDB::RecordANISOU
BALL::PDB::RecordATOM
BALL::PDB::RecordAUTHOR
BALL::PDB::RecordCAVEAT
BALL::PDB::RecordCISPEP
BALL::PDB::RecordCOMPND
BALL::PDB::RecordCONECT
BALL::PDB::RecordCRYST1
BALL::PDB::RecordDBREF
BALL::PDB::RecordEND
BALL::PDB::RecordENDMDL
BALL::PDB::RecordEXPDTA
BALL::PDB::RecordFORMUL
BALL::PDB::RecordFTNOTE
BALL::PDB::RecordHEADER
BALL::PDB::RecordHELIX
BALL::PDB::RecordHET
BALL::PDB::RecordHETATM
BALL::PDB::RecordHETNAM
BALL::PDB::RecordHETSYN
BALL::PDB::RecordHYDBND
BALL::PDB::RecordJRNL
BALL::PDB::RecordKEYWDS
BALL::PDB::RecordLINK
BALL::PDB::RecordMASTER
BALL::PDB::RecordMODEL
BALL::PDB::RecordMODRES
BALL::PDB::RecordMTRIX1
BALL::PDB::RecordMTRIX2
BALL::PDB::RecordMTRIX3
BALL::PDB::RecordOBSLTE
BALL::PDB::RecordORIGX1
BALL::PDB::RecordORIGX2
BALL::PDB::RecordORIGX3
BALL::PDB::RecordREMARK
BALL::PDB::RecordREVDAT
BALL::PDB::RecordSCALE1
BALL::PDB::RecordSCALE2
BALL::PDB::RecordSCALE3
BALL::PDB::RecordSEQADV
BALL::PDB::RecordSEQRES
BALL::PDB::RecordSHEET
BALL::PDB::RecordSIGATM
BALL::PDB::RecordSIGUIJ
BALL::PDB::RecordSITE
BALL::PDB::RecordSLTBRG
BALL::PDB::RecordSOURCE
BALL::PDB::RecordSPRSDE
BALL::PDB::RecordSSBOND
BALL::PDB::RecordTER
BALL::PDB::RecordTITLE
BALL::PDB::RecordTURN
BALL::PDB::RecordTVECT
BALL::PDB::RecordTypeFormat
BALL::PDB::RecordUNKNOWN
BALL::SmartsMatcher::RecStruct_Wrapper class which is used as an interface in the matching code to the pool
BALL::SmartsMatcher::RecStructCore_Core structure of the recursive matching algorithm for the object pool
BALL::SmartsMatcher::RecStructPool_Class which does the pool operations of the RecStructCore_ pool
BALL::ReducedSurface
BALL::VIEW::RegisterHelpSystemMessage
BALL::VIEW::RegularData1DWidget
BALL::VIEW::RegularData2DWidget
BALL::VIEW::RegularData3DController
BALL::RegularExpression
BALL::ReissCavFreeEnergyProcessor
BALL::RelHydrophobicVdWSurface
BALL::RelNegativePartialCharge
BALL::RelNegativePolarVdWSurface
BALL::RelNegativeVdWSurface
BALL::RelNumberOfRotatableBonds
BALL::RelNumberOfRotatableSingleBonds
BALL::RelPolarVdWSurface
BALL::RelPositivePartialCharge
BALL::RelPositivePolarVdWSurface
BALL::RelPositiveVdWSurface
BALL::VIEW::Renderer
BALL::VIEW::RenderSetup
BALL::VIEW::RenderTarget
BALL::VIEW::RenderWindow< taPixelDatatype >
BALL::VIEW::Representation
BALL::VIEW::RepresentationManager
BALL::VIEW::RepresentationMessageBase class for all messages concerning a Representation
BALL::Residue
BALL::PDB::Residue
BALL::ResidueChecker
BALL::HBondProcessor::ResidueData
BALL::ResidueIDPredicate
BALL::ResidueIteratorTraits
BALL::VIEW::ResidueNameColorProcessor
BALL::VIEW::ResidueNumberColorProcessor
BALL::ResiduePredicate
BALL::ResidueRotamerSet
BALL::ResidueTorsions
BALL::VIEW::ResidueTypeColorProcessor
BALL::VIEW::Resolution
BALL::ResourceEntry
BALL::ResourceFile
BALL::JohnsonBoveyShiftProcessor::Ring
BALL::RingAnalyserClass, providing methods for the analysis of the structure of ringsystems
BALL::RingClustererClass, providing a method for agglomerative clustering of single rings to ringsystems
BALL::RingFinder
BALL::RingAnalyser::RingInfo
BALL::RingPerceptionProcessor
BALL::RMSDMinimizer
BALL::RombergIntegrator< Function, DataType >
BALL::Rotamer
BALL::RotamerLibraryRotamer Library Class
BALL::ResidueRotamerSet::RotamerProbabilityGreaterThan_
BALL::RotationalEntropyLoss
BALL::GeometricFit::RotationAngles_
BALL::RSComputer
BALL::RSConstructorClass, performing the prefabication of ringsystems (i.e. providing them with relative 2D-coordinates)
BALL::RSEdge
BALL::RSFace
BALL::RSVertex
BALL::RuleEvaluator
BALL::RuleProcessor
BALL::VIEW::RunGAMESSDialog
BALL::VIEW::RunPythonThread
BALL::SampleCondition
BALL::SASEdge
BALL::SASFace
BALL::SASTriangulator
BALL::SASVertex
BALL::VIEW::Scene
BALL::VIEW::SceneMessage
BALL::DockResult::Scoring_
BALL::ScoringBaseFunction
BALL::ScoringComponent
BALL::ScoringFunction
BALL::ScoringTypes
BALL::SCWRLRotamerFileReads Dunbrack/SCWRL rotamer library files
BALL::SDFile
BALL::SDGeneratorThe main class, provides methods for analysis of the input
BALL::VIEW::SDWidget
BALL::SecondaryStructure
BALL::VIEW::SecondaryStructureColorProcessor
BALL::SecondaryStructureIteratorTraits
BALL::SecondaryStructurePredicate
BALL::SecondaryStructureProcessor
BALL::INIFile::Section
BALL::Selectable
BALL::SelectedPredicate
BALL::Selector
BALL::VIEW::ServerPreferences
BALL::VIEW::ServerWidget
BALL::SESComputer
BALL::SESEdge
BALL::SESFace
BALL::SESSingularityCleaner
BALL::SESTriangulator
BALL::SESVertex
BALL::VIEW::SetCamera
BALL::VIEW::SetClippingPlane
BALL::MOL2File::SetStructA class used for storing TRIPOS sets
BALL::ShiftedLVMMMinimizer
BALL::ShiftModel
BALL::ShiftModule
BALL::ShiftReferenceElement
BALL::ShiftReferenceSet
BALL::VIEW::ShortcutDialog
BALL::VIEW::ShortcutRegistry
BALL::VIEW::ShortcutTableModel
BALL::VIEW::ShortcutTableView
BALL::VIEW::ShowDisplayPropertiesMessage
BALL::VIEW::ShowHelpMessage
BALL::SimpleBase
BALL::VIEW::SimpleBox
BALL::SimpleExperiment1D
BALL::VIEW::SimulationThread
BALL::AmberTorsion::SingleAmberTorsion
BALL::SingleBondsPredicate
BALL::CharmmTorsion::SingleCharmmTorsion
BALL::CosineTorsion::SingleData
BALL::CosineTorsion::SingleValues
BALL::SizeOfSSSR
BALL::Exception::SizeUnderflow
BALL::SLICKEnergy
BALL::SLICKScore
BALL::SmartsMatcher
BALL::SmartsParser
BALL::SMARTSPredicate
BALL::SmilesParser
BALL::SnapShot
BALL::SnapShotManager
BALL::VIEW::SnapshotVisualisationDialog
BALL::AssignBondOrderProcessor::Solution_
BALL::SolventAccessibleSurface
BALL::SolventAtomDescriptor
BALL::SolventDescriptor
BALL::SolventExcludedSurface
BALL::SolventParameter
BALL::SolventPredicate
BALL::Sp2HybridizedPredicate
BALL::Sp3HybridizedPredicate
BALL::SmilesParser::SPAtom
BALL::SmartsParser::SPAtomSmarts Parser Atom class
BALL::SmartsParser::SPBondBond representation of the smarts parser
BALL::SmilesParser::SPBond
BALL::Spectrum< DataT, PeakT, PositionT >
BALL::SmartsParser::SPEdgeEdge representation of the smarts parser graph
BALL::VIEW::Sphere
BALL::BindingPocketProcessor::Sphere_
BALL::BindingPocketProcessor::SphereComparator_
BALL::SpHybridizedPredicate
BALL::SmartsParser::SPNodeRepresentation of a node in the smarts parser graph
BALL::SquareFunction< Function, DataType >
BALL::VIEW::Stage
BALL::VIEW::StageSettings
BALL::ExpressionParser::State
BALL::GAMESSLogFile::State
BALL::GAMESSDatFile::State
BALL::SmilesParser::State
BALL::SmartsParser::StateParser state (used by the parser itself)
BALL::GAFFCESParser::State
BALL::Atom::StaticAtomAttributes
BALL::SteepestDescentMinimizer
BALL::VIEW::StereoSettingsDialog
BALL::VIEW::STLRenderer
BALL::StrangLBFGSMinimizer
streambuf
BALL::LogStreamBuf::StreamStruct
BALL::MMFF94StretchBend::Stretch
BALL::MMFF94StretchBend::StretchBend
BALL::String
BALL::StringHashMap< Value >
BALL::PDB::Structure
BALL::StructureMapper
BALL::Substring
BALL::MOL2File::SubstructureStruct
BALL::Subtraction< First, Second, DataType >
BALL::SurfaceBase
BALL::SurfaceProcessor
BALL::PTE_::SymbolToElement
BALL::VIEW::SyncClippingPlanesMessage
BALL::ExpressionParser::SyntaxTree
BALL::System
BALL::TAngle< T >
BALL::TBox3< T >
BALL::TCircle3< T >
BALL::TContour< T >
BALL::TContourLine< T >
BALL::TContourSurface< T >
BALL::TCPIOStream
BALL::TCPServer
BALL::TCPServerThread
BALL::TCPTransfer
BALL::VIEW::TemperatureFactorColorProcessor
BALL::Templates
BALL::VIEW::TestFramework
BALL::TextPersistenceManager
BALL::TFFT1D< ComplexTraits >
BALL::TFFT2D< ComplexTraits >
BALL::TFFT3D< ComplexTraits >
BALL::VIEW::TilingRenderer
BALL::Timer
BALL::TimeStamp
BALL::TLine3< T >
BALL::TMatrix4x4< T >
BALL::TMolecularGraph< Node, Edge >
BALL::TMutex< MutexType >
BALL::TMutex< QMutex >
BALL::TMutexLocker< MutexLockerType, MutexType >
BALL::RingPerceptionProcessor::TNode_
BALL::RMSDMinimizer::TooFewCoordinates
BALL::Exception::TooManyBondsException to be thrown if too many bonds for one atom
BALL::Exception::TooManyErrorsException to be thrown if too many errors occur, e.g. in ForceField
BALL::MMFF94Torsion::TorsionSee MMFFTOR.PAR
BALL::TotalNegativePartialCharge
BALL::TotalPositivePartialCharge
BALL::TPlane3< T >
BALL::TQuaternion< T >
BALL::VIEW::TrajectoryController
BALL::TrajectoryFile
BALL::TCPTransfer::TransferFailed
BALL::VIEW::TransformationEvent6D
BALL::TransformationManager
BALL::VIEW::TransformationMessage
BALL::TransformationProcessor
BALL::TranslationProcessor
BALL::TReadLocker< ReadLockerType, ReadWriteLockType >
BALL::TReadWriteLock< ReadWriteLockType >
BALL::TReadWriteLock< QReadWriteLock >
BALL::VIEW::TreeWidget
BALL::TRegularData1D< ValueType >
BALL::TRegularData2D< ValueType >
BALL::TRegularData3D< ValueType >
BALL::TSurface< T >::Triangle
BALL::Triangle
BALL::TriangleEdge
BALL::TrianglePoint
BALL::TriangulatedSAS
BALL::TriangulatedSES
BALL::TriangulatedSphere
BALL::TriangulatedSurface
BALL::Triple< T1, T2, T3 >
BALL::TripleBondsPredicate
BALL::TRRFile
BALL::TRRFile::TRRHeader
BALL::GAFFCESParser::TruePredicate
BALL::TruePredicate
BALL::TSimpleBox3< T >
BALL::TSphere3< T >
BALL::TSurface< T >
BALL::VIEW::Tube
BALL::TVector2< T >
BALL::TVector3< T >
BALL::TVector4< T >
BALL::VIEW::TwoColoredLine
BALL::VIEW::TwoColoredTube
BALL::TWriteLocker< WriteLockerType, ReadWriteLockType >
BALL::GAFFTypeProcessor::TypeDefinitionNested class definitions
BALL::TypenameRuleProcessor
BALL::TypeRuleProcessor
BALL::UCK
BALL::UhligCavFreeEnergyProcessor
Ui_AmberConfigurationDialogData
Ui_AssignBondOrderConfigurationDialogData
Ui_AssignBondOrderResultsDialogData
Ui_AtomOverviewData
Ui_BondPropertiesData
Ui_CharmmConfigurationDialogData
Ui_ClippingDialogData
Ui_ColoringSettingsDialogData
Ui_CompositePropertiesData
Ui_ContourSurfaceDialogData
Ui_DemoTutorialDialogData
Ui_DisplayPropertiesData
Ui_DockDialogData
Ui_DockProgressDialogData
Ui_DockResultDialogData
Ui_DownloadPDBFileData
Ui_EditOperationDialogData
Ui_EditSettingsData
Ui_EditSingleShortcutData
Ui_ExportGeometryDialogData
Ui_FDPBDialogData
Ui_GeometricFitDialogData
Ui_GridVisualizationDialogData
Ui_LabelDialogData
Ui_LightSettingsData
Ui_MainControlPreferencesData
Ui_MaterialSettingsData
Ui_MinimizationDialogData
Ui_MMFF94ConfigurationDialogData
Ui_ModelSettingsDialogData
Ui_ModifyRepresentationDialogData
Ui_MolecularDynamicsDialogData
Ui_NetworkPreferencesData
Ui_OpenSavePreferencesData
Ui_ParsedFunctionDialogData
Ui_PeptideDialogData
Ui_PluginDialogData
Ui_PreferencesData
Ui_PTEDialogData
Ui_PubChemDialogData
Ui_PythonSettingsData
Ui_RaytraceableContourSurfaceDialogData
Ui_RunGAMESSDialogData
Ui_SetCameraData
Ui_SetClippingData
Ui_ShortcutDialogData
Ui_SnapshotVisualisationDialogData
Ui_StageSettingsData
Ui_StereoSettingsDialogData
BALL::UnaryFunctor< ArgumentType, ResultType >
BALL::UnaryPredicate< T >
BALL::UnaryProcessor< T >
BALL::Substring::UnboundSubstring
BALL::PDB::RecordCRYST1::UnitCell
BALL::VIEW::UpdateRepresentationThread
BALL::LennardJones::Values
BALL::CharmmEEF1::Values
BALL::QuadraticBondStretch::Values
BALL::Potential1210::Values
BALL::QuadraticAngleBend::Values
BALL::QuadraticImproperTorsion::Values
BALL::CosineTorsion::Values
BALL::VanDerWaals
BALL::MMFF94VDWParameters::VDWEntry
BALL::VdWSurface
BALL::VdWVolume
BALL::VIEW::VectorGridController
BALL::VersionInfo
BALL::VIEW::Vertex
BALL::VIEW::Vertex2
BALL::VertexAdjacency
BALL::VertexAdjacencyEquality
BALL::VIEW::VIEWPlugin
BALL::Visitor< Host >
BALL::VIEW::VRMLRenderer
WriteLockerType
BALL::VIEW::GLRenderer::WrongModes
BALL::XDRPersistenceManager
BALL::XYZFile
BALL::ZagrebIndex