BALL  1.4.1
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BALL::DNAMutator Member List

This is the complete list of members for BALL::DNAMutator, including all inherited members.

ADENINE enum valueBALL::DNAMutator
Base enum nameBALL::DNAMutator
bases_BALL::DNAMutatorprivatestatic
CYTOSINE enum valueBALL::DNAMutator
db_BALL::DNAMutatorprivate
default_num_steps_BALL::DNAMutatorprivatestatic
DNAMutator(EnergyMinimizer *mini=NULL, ForceField *ff=NULL, FragmentDB *frag=NULL)BALL::DNAMutator
ff_BALL::DNAMutatorprivate
freeDB_()BALL::DNAMutatorprivate
freeFF_()BALL::DNAMutatorprivate
getAttachmentAtom(AtomContainer *res)BALL::DNAMutatorprivate
getConnectionAtom(Atom *at)BALL::DNAMutatorprivate
getNormalVector(const Atom *at)BALL::DNAMutatorprivate
getOrthogonalVector(const Vector3 &n, const Atom *base, const Atom *at)BALL::DNAMutatorprivate
getSecondNitro(const std::vector< const Atom * > &ring_atoms, const Atom *base)BALL::DNAMutatorprivate
GUANINE enum valueBALL::DNAMutator
isPurine(const Atom &baseNitrogen) const BALL::DNAMutatorprivate
isPyrimidine(const Atom &baseNitrogen) const BALL::DNAMutatorprivate
keep_db_BALL::DNAMutatorprivate
keep_ff_BALL::DNAMutatorprivate
mark_(AtomContainer *atoms)BALL::DNAMutatorprivate
markBaseAtoms(AtomContainer *res)BALL::DNAMutatorprivate
minimizer_BALL::DNAMutatorprivate
mutate(Fragment *res, Base base)BALL::DNAMutator
num_steps_BALL::DNAMutatorprivate
optimize_(Fragment *frag)BALL::DNAMutatorprivate
prop_BALL::DNAMutatorprivate
rotateBases(AtomContainer *from, const Atom *from_at, const Atom *to_at, const Vector3 &from_connection, const Vector3 &to_connection)BALL::DNAMutatorprivate
rotateSameBases(AtomContainer *from, AtomContainer *to)BALL::DNAMutatorprivate
setForceField(ForceField *ff)BALL::DNAMutator
setFragmentDB(FragmentDB *frag)BALL::DNAMutator
setMaxOptimizationSteps(Size steps)BALL::DNAMutator
setMinimizer(EnergyMinimizer *mini)BALL::DNAMutator
setup()BALL::DNAMutator
setUsedProperty(Property p)BALL::DNAMutator
THYMINE enum valueBALL::DNAMutator
tryFlip_(Fragment *res, const Vector3 &connect_atom, const Vector3 &axis) const BALL::DNAMutatorprivate
unmark_(AtomContainer *atoms)BALL::DNAMutatorprivate
URACILE enum valueBALL::DNAMutator
~DNAMutator()BALL::DNAMutator