Interface | Description |
---|---|
CharacterStateMatrix<S> | |
DistanceMatrix | |
DistanceMatrixParser | |
DistanceMethod |
Class | Description |
---|---|
BasicCharacterStateMatrix<S> | |
BasicSymmetricalDistanceMatrix | |
DiscreteState | |
DolloParsimony | |
FitchParsimony<STATE_TYPE> | |
NeighborJoining | |
SankoffParsimony<STATE_TYPE> | |
SymmetricalDistanceMatrixParser | |
TestPhylogenyReconstruction |
Enum | Description |
---|---|
CharacterStateMatrix.BinaryStates |
It is crucial that the order
ABSENT, UNKNOWN, PRESENT not be changes since
this determines the sort order.
|
CharacterStateMatrix.Format | |
CharacterStateMatrix.GainLossStates | |
CharacterStateMatrix.NucleotideStates | |
DistanceMatrix.Format | |
SymmetricalDistanceMatrixParser.InputMatrixType |