public class PropertiesMap extends java.lang.Object implements PhylogenyData
Constructor and Description |
---|
PropertiesMap() |
Modifier and Type | Method and Description |
---|---|
void |
addProperty(Property property) |
java.lang.StringBuffer |
asSimpleText() |
java.lang.StringBuffer |
asText() |
PhylogenyData |
copy()
Creates a new PhylogenyData object with identical values as this
PhylogenyData.
|
java.util.SortedMap<java.lang.String,Property> |
getProperties() |
Property[] |
getPropertiesArray() |
java.util.List<Property> |
getPropertiesWithGivenReferencePrefix(java.lang.String ref_prefix) |
Property |
getProperty(java.lang.String ref) |
java.lang.String[] |
getPropertyRefs()
Returns all property refs of this PhylogenyNode as String array.
|
boolean |
isEqual(PhylogenyData data)
Compares this PhylogenyData to PhylogenyData data.
|
boolean |
refExists(java.lang.String ref) |
java.util.List<java.lang.String> |
removePropertiesWithGivenReferencePrefix(java.lang.String ref_prefix) |
Property |
removeProperty(java.lang.String ref) |
int |
size() |
java.lang.StringBuffer |
toNHX() |
void |
toPhyloXML(java.io.Writer writer,
int level,
java.lang.String indentation)
Writes a phyloXML representation of this phylogeny data.
|
java.lang.String |
toString() |
public int size()
public void addProperty(Property property) throws java.lang.IllegalArgumentException
java.lang.IllegalArgumentException
public java.lang.StringBuffer asSimpleText()
asSimpleText
in interface PhylogenyData
public java.lang.StringBuffer asText()
asText
in interface PhylogenyData
public PhylogenyData copy()
PhylogenyData
copy
in interface PhylogenyData
public java.util.SortedMap<java.lang.String,Property> getProperties()
public Property[] getPropertiesArray()
public java.util.List<Property> getPropertiesWithGivenReferencePrefix(java.lang.String ref_prefix) throws java.lang.IllegalArgumentException
java.lang.IllegalArgumentException
public Property getProperty(java.lang.String ref) throws java.lang.IllegalArgumentException
java.lang.IllegalArgumentException
public java.lang.String[] getPropertyRefs()
public boolean isEqual(PhylogenyData data)
PhylogenyData
isEqual
in interface PhylogenyData
public boolean refExists(java.lang.String ref)
public Property removeProperty(java.lang.String ref) throws java.lang.IllegalArgumentException
java.lang.IllegalArgumentException
public java.util.List<java.lang.String> removePropertiesWithGivenReferencePrefix(java.lang.String ref_prefix) throws java.lang.IllegalArgumentException
java.lang.IllegalArgumentException
public java.lang.StringBuffer toNHX()
toNHX
in interface PhylogenyData
public void toPhyloXML(java.io.Writer writer, int level, java.lang.String indentation) throws java.io.IOException
PhylogenyData
toPhyloXML
in interface PhylogenyData
java.io.IOException
public java.lang.String toString()
toString
in class java.lang.Object