public final class RenderableVector extends java.lang.Object implements RenderablePhylogenyData
Modifier and Type | Field and Description |
---|---|
static int |
DEFAULT_HEIGHT |
static int |
DEFAULT_WIDTH |
Modifier and Type | Method and Description |
---|---|
java.lang.StringBuffer |
asSimpleText() |
java.lang.StringBuffer |
asText() |
java.lang.Object |
clone() |
PhylogenyData |
copy()
Creates a new PhylogenyData object with identical values as this
PhylogenyData.
|
static RenderableVector |
createInstance(java.util.List<java.lang.Double> values,
DescriptiveStatistics stats,
Configuration configuration) |
java.awt.Dimension |
getOriginalSize() |
java.lang.Object |
getParameter() |
double |
getRenderingFactorWidth() |
java.awt.Dimension |
getRenderingSize() |
int |
getTotalLength() |
boolean |
isEqual(PhylogenyData data)
Compares this PhylogenyData to PhylogenyData data.
|
void |
render(double x1,
double y1,
java.awt.Graphics2D g,
TreePanel tree_panel,
boolean to_pdf)
This can be used to render phylogeny data as graphics (for example,
display of the domain structure).
|
void |
setParameter(double parameter) |
void |
setRenderingFactorWidth(double rendering_factor_width) |
void |
setRenderingHeight(double height) |
java.lang.StringBuffer |
toNHX() |
void |
toPhyloXML(java.io.Writer writer,
int level,
java.lang.String indentation)
Writes a phyloXML representation of this phylogeny data.
|
public static final int DEFAULT_HEIGHT
public static final int DEFAULT_WIDTH
public static RenderableVector createInstance(java.util.List<java.lang.Double> values, DescriptiveStatistics stats, Configuration configuration)
public java.lang.Object clone()
clone
in class java.lang.Object
public java.lang.StringBuffer asSimpleText()
asSimpleText
in interface PhylogenyData
public java.lang.StringBuffer asText()
asText
in interface PhylogenyData
public double getRenderingFactorWidth()
public int getTotalLength()
public boolean isEqual(PhylogenyData data)
PhylogenyData
isEqual
in interface PhylogenyData
public void render(double x1, double y1, java.awt.Graphics2D g, TreePanel tree_panel, boolean to_pdf)
RenderablePhylogenyData
render
in interface RenderablePhylogenyData
g
- the Graphics to render topublic void setRenderingFactorWidth(double rendering_factor_width)
public java.lang.StringBuffer toNHX()
toNHX
in interface PhylogenyData
public void toPhyloXML(java.io.Writer writer, int level, java.lang.String indentation) throws java.io.IOException
PhylogenyData
toPhyloXML
in interface PhylogenyData
java.io.IOException
public PhylogenyData copy()
PhylogenyData
copy
in interface PhylogenyData
public java.awt.Dimension getOriginalSize()
getOriginalSize
in interface RenderablePhylogenyData
public java.lang.Object getParameter()
getParameter
in interface RenderablePhylogenyData
public java.awt.Dimension getRenderingSize()
getRenderingSize
in interface RenderablePhylogenyData
public void setParameter(double parameter)
setParameter
in interface RenderablePhylogenyData
public void setRenderingHeight(double height)
setRenderingHeight
in interface RenderablePhylogenyData