public class PhylogeneticInferrer extends RunnableProcess
Modifier and Type | Field and Description |
---|---|
static java.lang.String |
MSA_FILE_SUFFIX |
static java.lang.String |
PWD_FILE_SUFFIX |
Constructor and Description |
---|
PhylogeneticInferrer(java.util.List<Sequence> seqs,
PhylogeneticInferenceOptions options,
MainFrameApplication mf) |
PhylogeneticInferrer(Msa msa,
PhylogeneticInferenceOptions options,
MainFrameApplication mf) |
Modifier and Type | Method and Description |
---|---|
static void |
extractFastaInformation(Phylogeny phy) |
void |
run() |
end, start
public static final java.lang.String MSA_FILE_SUFFIX
public static final java.lang.String PWD_FILE_SUFFIX
public PhylogeneticInferrer(java.util.List<Sequence> seqs, PhylogeneticInferenceOptions options, MainFrameApplication mf)
public PhylogeneticInferrer(Msa msa, PhylogeneticInferenceOptions options, MainFrameApplication mf)
public void run()
public static void extractFastaInformation(Phylogeny phy)