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compute temp command

Syntax:

compute ID group-ID temp 

Examples:

compute 1 all temp
compute myTemp mobile temp 

Description:

Define a computation that calculates the temperature of a group of atoms. A compute of this style can be used by any command that computes a temperature, e.g. thermo_modify, fix temp/rescale, fix npt, etc.

The temperature is calculated by the formula KE = dim/2 N k T, where KE = total kinetic energy of the group of atoms (sum of 1/2 m v^2), dim = 2 or 3 = dimensionality of the simulation, N = number of atoms in the group, k = Boltzmann constant, and T = temperature.

A kinetic energy tensor, stored as a 6-element vector, is also calculated by this compute for use in the computation of a pressure tensor. The formula for the components of the tensor is the same as the above formula, except that v^2 is replaced by vx*vy for the xy component, etc. The 6 components of the vector are ordered xx, yy, zz, xy, xz, yz.

The number of atoms contributing to the temperature is assumed to be constant for the duration of the run; use the dynamic option of the compute_modify command if this is not the case.

This compute subtracts out degrees-of-freedom due to fixes that constrain molecular motion, such as fix shake and fix rigid. This means the temperature of groups of atoms that include these constraints will be computed correctly. If needed, the subtracted degrees-of-freedom can be altered using the extra option of the compute_modify command.

A compute of this style with the ID of "thermo_temp" is created when LAMMPS starts up, as if this command were in the input script:

compute thermo_temp all temp 

See the "thermo_style" command for more details.

See this howto section of the manual for a discussion of different ways to compute temperature and perform thermostatting.

Output info:

This compute calculates a global scalar (the temperature) and a global vector of length 6 (KE tensor), which can be accessed by indices 1-6. These values can be used by any command that uses global scalar or vector values from a compute as input. See this section for an overview of LAMMPS output options.

The scalar value calculated by this compute is "intensive". The vector are "extensive".

The scalar value will be in temperature units. The vector values will be in energy units.

Restrictions: none

Related commands:

compute temp/partial, compute temp/region, compute pressure

Default: none