Package csb :: Package bio :: Package fragments :: Class TargetSegment
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Class TargetSegment

source code

object --+
         |
        TargetSegment

Instance Methods
 
__init__(self, start, end, count)
x.__init__(...) initializes x; see help(type(x)) for signature
source code
 
assign(self, fragment) source code
 
best(self, method='rmsd_to') source code
 
confidence(self) source code
 
longest(self) source code
 
pairwise_mda(self, min_overlap=5) source code
 
pairwise_rmsd(self, min_overlap=5) source code
 
pairwise_sa_rmsd(self, profiles='.', min_overlap=5) source code
 
pairwise_scores(self, profiles='.', min_overlap=5) source code
 
rmsd_consistency(self, threshold=1.5) source code
 
rmsd_entropy(self, binsize=0.1) source code
 
sa_rmsd_consistency(self, threshold=0.4, profiles='.') source code
 
score_entropy(self, profiles='.', binsize=1) source code
 
true_positives(self, threshold=1.5) source code
 
verybest(self) source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties
  assignments
  count
  end
  length
  start

Inherited from object: __class__

Method Details

__init__(self, start, end, count)
(Constructor)

source code 

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__
(inherited documentation)

Property Details

assignments

Get Method:
unreachable.assignments(self)

count

Get Method:
unreachable.count(self)

end

Get Method:
unreachable.end(self)

length

Get Method:
unreachable.length(self)

start

Get Method:
unreachable.start(self)