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A transform based on the itk::AdvancedMatrixOffsetTransformBase. More...
#include <elxAdvancedAffineTransform.h>
A transform based on the itk::AdvancedMatrixOffsetTransformBase.
This transform is an affine transformation.
The first couple of parameters (4 in 2D and 9 in 3D) define the affine matrix, the last couple (2 in 2D and 3 in 3D) define the translation.
The parameters used in this class are:
(Transform "AffineTransform")
(Scales 200000.0)
(Scales 100000.0 60000.0 ... 80000.0)
( AutomaticScalesEstimation "true" )
(CenterOfRotation 128 128 90)
(AutomaticTransformInitialization "true")
(AutomaticTransformInitializationMethod "CenterOfGravity")
The transform parameters necessary for transformix, additionally defined by this class, are:
(CenterOfRotation 128 128 90)
deprecated! From elastix version 3.402 this is changed to CenterOfRotationPoint! (CenterOfRotationPoint 10.555 6.666 12.345)
Definition at line 76 of file elxAdvancedAffineTransform.h.
typedef AffineTransformType::Pointer elastix::AdvancedAffineTransformElastix< TElastix >::AffineTransformPointer |
Definition at line 154 of file elxAdvancedAffineTransform.h.
typedef AdvancedMatrixOffsetTransformBase< typename elx::TransformBase<TElastix>::CoordRepType, elx::TransformBase<TElastix>::FixedImageDimension, elx::TransformBase<TElastix>::MovingImageDimension > elastix::AdvancedAffineTransformElastix< TElastix >::AffineTransformType |
The ITK-class that provides most of the functionality, and that is set as the "CurrentTransform" in the CombinationTransform
Definition at line 98 of file elxAdvancedAffineTransform.h.
typedef Superclass2::CombinationTransformType elastix::AdvancedAffineTransformElastix< TElastix >::CombinationTransformType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 139 of file elxAdvancedAffineTransform.h.
typedef Superclass2::ConfigurationPointer elastix::AdvancedAffineTransformElastix< TElastix >::ConfigurationPointer |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 132 of file elxAdvancedAffineTransform.h.
typedef Superclass2::ConfigurationType elastix::AdvancedAffineTransformElastix< TElastix >::ConfigurationType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 131 of file elxAdvancedAffineTransform.h.
typedef SmartPointer<const Self> elastix::AdvancedAffineTransformElastix< TElastix >::ConstPointer |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 91 of file elxAdvancedAffineTransform.h.
typedef Superclass2::CoordRepType elastix::AdvancedAffineTransformElastix< TElastix >::CoordRepType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 135 of file elxAdvancedAffineTransform.h.
typedef FixedImageType::DirectionType elastix::AdvancedAffineTransformElastix< TElastix >::DirectionType |
Definition at line 148 of file elxAdvancedAffineTransform.h.
typedef Superclass2::ElastixPointer elastix::AdvancedAffineTransformElastix< TElastix >::ElastixPointer |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 130 of file elxAdvancedAffineTransform.h.
typedef Superclass2::ElastixType elastix::AdvancedAffineTransformElastix< TElastix >::ElastixType |
Typedef's from the TransformBase class.
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 129 of file elxAdvancedAffineTransform.h.
typedef Superclass2::FixedImageType elastix::AdvancedAffineTransformElastix< TElastix >::FixedImageType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 136 of file elxAdvancedAffineTransform.h.
typedef FixedImageType::IndexType elastix::AdvancedAffineTransformElastix< TElastix >::IndexType |
Other typedef's.
Definition at line 142 of file elxAdvancedAffineTransform.h.
typedef IndexType::IndexValueType elastix::AdvancedAffineTransformElastix< TElastix >::IndexValueType |
Definition at line 143 of file elxAdvancedAffineTransform.h.
typedef Superclass1::InputCovariantVectorType elastix::AdvancedAffineTransformElastix< TElastix >::InputCovariantVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 121 of file elxAdvancedAffineTransform.h.
typedef Superclass1::InputPointType elastix::AdvancedAffineTransformElastix< TElastix >::InputPointType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 125 of file elxAdvancedAffineTransform.h.
typedef Superclass1::InputVectorType elastix::AdvancedAffineTransformElastix< TElastix >::InputVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 119 of file elxAdvancedAffineTransform.h.
typedef Superclass1::InputVnlVectorType elastix::AdvancedAffineTransformElastix< TElastix >::InputVnlVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 123 of file elxAdvancedAffineTransform.h.
typedef Superclass2::ITKBaseType elastix::AdvancedAffineTransformElastix< TElastix >::ITKBaseType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 138 of file elxAdvancedAffineTransform.h.
typedef Superclass1::JacobianType elastix::AdvancedAffineTransformElastix< TElastix >::JacobianType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 118 of file elxAdvancedAffineTransform.h.
typedef Superclass2::MovingImageType elastix::AdvancedAffineTransformElastix< TElastix >::MovingImageType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 137 of file elxAdvancedAffineTransform.h.
typedef Superclass1::OutputCovariantVectorType elastix::AdvancedAffineTransformElastix< TElastix >::OutputCovariantVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 122 of file elxAdvancedAffineTransform.h.
typedef Superclass1::OutputPointType elastix::AdvancedAffineTransformElastix< TElastix >::OutputPointType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 126 of file elxAdvancedAffineTransform.h.
typedef Superclass1::OutputVectorType elastix::AdvancedAffineTransformElastix< TElastix >::OutputVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 120 of file elxAdvancedAffineTransform.h.
typedef Superclass1::OutputVnlVectorType elastix::AdvancedAffineTransformElastix< TElastix >::OutputVnlVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 124 of file elxAdvancedAffineTransform.h.
typedef Superclass1::ParametersType elastix::AdvancedAffineTransformElastix< TElastix >::ParametersType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 117 of file elxAdvancedAffineTransform.h.
typedef SmartPointer<Self> elastix::AdvancedAffineTransformElastix< TElastix >::Pointer |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 90 of file elxAdvancedAffineTransform.h.
typedef FixedImageType::PointType elastix::AdvancedAffineTransformElastix< TElastix >::PointType |
Definition at line 145 of file elxAdvancedAffineTransform.h.
typedef FixedImageType::RegionType elastix::AdvancedAffineTransformElastix< TElastix >::RegionType |
Definition at line 147 of file elxAdvancedAffineTransform.h.
typedef Superclass2::RegistrationPointer elastix::AdvancedAffineTransformElastix< TElastix >::RegistrationPointer |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 134 of file elxAdvancedAffineTransform.h.
typedef Superclass2::RegistrationType elastix::AdvancedAffineTransformElastix< TElastix >::RegistrationType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 133 of file elxAdvancedAffineTransform.h.
typedef Superclass1::ScalarType elastix::AdvancedAffineTransformElastix< TElastix >::ScalarType |
Typedefs inherited from the superclass.
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 116 of file elxAdvancedAffineTransform.h.
typedef Superclass2::ScalesType elastix::AdvancedAffineTransformElastix< TElastix >::ScalesType |
For scales setting in the optimizer
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 157 of file elxAdvancedAffineTransform.h.
typedef AdvancedAffineTransformElastix elastix::AdvancedAffineTransformElastix< TElastix >::Self |
Standard ITK-stuff.
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 85 of file elxAdvancedAffineTransform.h.
typedef FixedImageType::SizeType elastix::AdvancedAffineTransformElastix< TElastix >::SizeType |
Definition at line 144 of file elxAdvancedAffineTransform.h.
typedef FixedImageType::SpacingType elastix::AdvancedAffineTransformElastix< TElastix >::SpacingType |
Definition at line 146 of file elxAdvancedAffineTransform.h.
typedef AdvancedCombinationTransform< typename elx::TransformBase<TElastix>::CoordRepType, elx::TransformBase<TElastix>::FixedImageDimension > elastix::AdvancedAffineTransformElastix< TElastix >::Superclass1 |
Definition at line 88 of file elxAdvancedAffineTransform.h.
typedef elx::TransformBase<TElastix> elastix::AdvancedAffineTransformElastix< TElastix >::Superclass2 |
Definition at line 89 of file elxAdvancedAffineTransform.h.
typedef TransformInitializerType::Pointer elastix::AdvancedAffineTransformElastix< TElastix >::TransformInitializerPointer |
Definition at line 153 of file elxAdvancedAffineTransform.h.
typedef CenteredTransformInitializer2< AffineTransformType, FixedImageType, MovingImageType> elastix::AdvancedAffineTransformElastix< TElastix >::TransformInitializerType |
Definition at line 152 of file elxAdvancedAffineTransform.h.
elastix::AdvancedAffineTransformElastix< TElastix >::AdvancedAffineTransformElastix | ( | ) | [protected] |
The constructor.
virtual elastix::AdvancedAffineTransformElastix< TElastix >::~AdvancedAffineTransformElastix | ( | ) | [inline, protected, virtual] |
The destructor.
Definition at line 207 of file elxAdvancedAffineTransform.h.
elastix::AdvancedAffineTransformElastix< TElastix >::AdvancedAffineTransformElastix | ( | const Self & | ) | [private] |
The private constructor.
virtual void elastix::AdvancedAffineTransformElastix< TElastix >::BeforeRegistration | ( | void | ) | [virtual] |
Execute stuff before the actual registration:
Reimplemented from elastix::BaseComponent.
elastix::AdvancedAffineTransformElastix< TElastix >::elxClassNameMacro | ( | "AffineTransform" | ) |
Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "AffineTransform")
virtual const char* elastix::AdvancedAffineTransformElastix< TElastix >::GetClassName | ( | ) | const [virtual] |
Run-time type information (and related methods).
Reimplemented from elastix::TransformBase< TElastix >.
virtual void elastix::AdvancedAffineTransformElastix< TElastix >::InitializeTransform | ( | void | ) | [virtual] |
Initialize Transform.
It is not yet possible to enter an initial rotation angle or scaling.
elastix::AdvancedAffineTransformElastix< TElastix >::itkStaticConstMacro | ( | SpaceDimension | , |
unsigned | int, | ||
Superclass2::FixedImageDimension | |||
) |
Dimension of the domain space.
static Pointer elastix::AdvancedAffineTransformElastix< TElastix >::New | ( | ) | [static] |
Method for creation through the object factory.
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
void elastix::AdvancedAffineTransformElastix< TElastix >::operator= | ( | const Self & | ) | [private] |
The private copy constructor.
virtual bool elastix::AdvancedAffineTransformElastix< TElastix >::ReadCenterOfRotationIndex | ( | InputPointType & | rotationPoint | ) | const [protected, virtual] |
Try to read the CenterOfRotation from the transform parameter file This is an index value, and, thus, converted to world coordinates. Transform parameter files generated by elastix version < 3.402 saved the center of rotation in this way.
virtual bool elastix::AdvancedAffineTransformElastix< TElastix >::ReadCenterOfRotationPoint | ( | InputPointType & | rotationPoint | ) | const [protected, virtual] |
Try to read the CenterOfRotationPoint from the transform parameter file The CenterOfRotationPoint is already in world coordinates. Transform parameter files generated by elastix version > 3.402 save the center of rotation in this way.
virtual void elastix::AdvancedAffineTransformElastix< TElastix >::ReadFromFile | ( | void | ) | [virtual] |
Function to read transform-parameters from a file.
It reads the center of rotation and calls the superclass' implementation.
Reimplemented from elastix::TransformBase< TElastix >.
virtual void elastix::AdvancedAffineTransformElastix< TElastix >::SetScales | ( | void | ) | [virtual] |
Set the scales
virtual void elastix::AdvancedAffineTransformElastix< TElastix >::WriteToFile | ( | const ParametersType & | param | ) | const [virtual] |
Function to write transform-parameters to a file. It writes the center of rotation to file and calls the superclass' implementation.
Reimplemented from elastix::TransformBase< TElastix >.
AffineTransformPointer elastix::AdvancedAffineTransformElastix< TElastix >::m_AffineTransform [private] |
Definition at line 230 of file elxAdvancedAffineTransform.h.
Generated on 24-10-2011 for elastix by ![]() |
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