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itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType > Class Template Reference

Generate the spatial Jacobian from a coordinate transform. More...

#include <itkTransformToDeterminantOfSpatialJacobianSource.h>

Inheritance diagram for itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >:
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Collaboration diagram for itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >:
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Public Types

typedef SmartPointer< const SelfConstPointer
typedef
OutputImageType::DirectionType 
DirectionType
typedef ImageBase
< itkGetStaticConstMacro(ImageDimension) > 
ImageBaseType
typedef OutputImageType::IndexType IndexType
typedef OutputImageType::PointType OriginType
typedef
OutputImageType::ConstPointer 
OutputImageConstPointer
typedef OutputImageType::Pointer OutputImagePointer
typedef OutputImageType::RegionType OutputImageRegionType
typedef TOutputImage OutputImageType
typedef OutputImageType::PixelType PixelType
typedef SmartPointer< SelfPointer
typedef OutputImageType::PointType PointType
typedef OutputImageType::RegionType RegionType
typedef
TransformToDeterminantOfSpatialJacobianSource 
Self
typedef RegionType::SizeType SizeType
typedef
OutputImageType::SpacingType 
SpacingType
typedef
TransformType::SpatialJacobianType 
SpatialJacobianType
typedef ImageSource< TOutputImage > Superclass
typedef TransformType::ConstPointer TransformPointerType
typedef AdvancedTransform
< TTransformPrecisionType,
itkGetStaticConstMacro(ImageDimension),
itkGetStaticConstMacro(ImageDimension)> 
TransformType

Public Member Functions

virtual void BeforeThreadedGenerateData (void)
virtual void GenerateOutputInformation (void)
virtual const char * GetClassName () const
unsigned long GetMTime (void) const
virtual const DirectionTypeGetOutputDirection ()
virtual const IndexTypeGetOutputIndex ()
virtual const OriginTypeGetOutputOrigin ()
virtual const
OutputImageRegionType
GetOutputRegion ()
virtual const SizeTypeGetOutputSize ()
virtual const SpacingTypeGetOutputSpacing ()
virtual const TransformTypeGetTransform ()
 itkStaticConstMacro (ImageDimension, unsigned int, TOutputImage::ImageDimension)
virtual void SetOutputDirection (DirectionType _arg)
virtual void SetOutputIndex (const IndexType &index)
virtual void SetOutputOrigin (const double *values)
virtual void SetOutputOrigin (OriginType _arg)
void SetOutputParametersFromImage (const ImageBaseType *image)
virtual void SetOutputRegion (OutputImageRegionType _arg)
virtual void SetOutputSize (const SizeType &size)
virtual void SetOutputSpacing (const double *values)
virtual void SetOutputSpacing (SpacingType _arg)
virtual void SetTransform (const TransformType *_arg)

Static Public Member Functions

static Pointer New ()

Protected Member Functions

void LinearGenerateData (void)
void NonlinearThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, int threadId)
void PrintSelf (std::ostream &os, Indent indent) const
void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, int threadId)
 TransformToDeterminantOfSpatialJacobianSource ()
 ~TransformToDeterminantOfSpatialJacobianSource ()

Private Member Functions

void operator= (const Self &)
 TransformToDeterminantOfSpatialJacobianSource (const Self &)

Private Attributes

DirectionType m_OutputDirection
OriginType m_OutputOrigin
RegionType m_OutputRegion
SpacingType m_OutputSpacing
TransformPointerType m_Transform

Detailed Description

template<class TOutputImage, class TTransformPrecisionType = double>
class itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >

Generate the spatial Jacobian from a coordinate transform.

This class was inspired on an the itkTransformToDeformationFieldSource class.

Output information (spacing, size and direction) for the output image should be set. This information has the normal defaults of unit spacing, zero origin and identity direction. Optionally, the output information can be obtained from a reference image. If the reference image is provided and UseReferenceImage is On, then the spacing, origin and direction of the reference image will be used.

Since this filter produces an image which is a different size than its input, it needs to override several of the methods defined in ProcessObject in order to properly manage the pipeline execution model. In particular, this filter overrides ProcessObject::GenerateInputRequestedRegion() and ProcessObject::GenerateOutputInformation().

This filter is implemented as a multithreaded filter. It provides a ThreadedGenerateData() method for its implementation.

Author:
Marius Staring, Leiden University Medical Center, The Netherlands.

This class was taken from the Insight Journal paper: http://hdl.handle.net/?/?

Definition at line 72 of file itkTransformToDeterminantOfSpatialJacobianSource.h.


Member Typedef Documentation

template<class TOutputImage , class TTransformPrecisionType = double>
typedef SmartPointer<const Self> itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::ConstPointer
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::DirectionType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::DirectionType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef ImageBase< itkGetStaticConstMacro( ImageDimension ) > itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::ImageBaseType

Typedefs for base image.

Definition at line 116 of file itkTransformToDeterminantOfSpatialJacobianSource.h.

template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::IndexType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::IndexType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::PointType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::OriginType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::ConstPointer itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::OutputImageConstPointer
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::Pointer itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::OutputImagePointer
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::RegionType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::OutputImageRegionType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef TOutputImage itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::OutputImageType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::PixelType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::PixelType

Typedefs for output image.

Definition at line 105 of file itkTransformToDeterminantOfSpatialJacobianSource.h.

template<class TOutputImage , class TTransformPrecisionType = double>
typedef SmartPointer<Self> itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::Pointer
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::PointType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::PointType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::RegionType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::RegionType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef TransformToDeterminantOfSpatialJacobianSource itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::Self

Standard class typedefs.

Definition at line 77 of file itkTransformToDeterminantOfSpatialJacobianSource.h.

template<class TOutputImage , class TTransformPrecisionType = double>
typedef RegionType::SizeType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SizeType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::SpacingType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SpacingType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef TransformType::SpatialJacobianType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SpatialJacobianType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef ImageSource<TOutputImage> itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::Superclass
template<class TOutputImage , class TTransformPrecisionType = double>
typedef TransformType::ConstPointer itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::TransformPointerType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef AdvancedTransform<TTransformPrecisionType, itkGetStaticConstMacro( ImageDimension ), itkGetStaticConstMacro( ImageDimension )> itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::TransformType

Typedefs for transform.

Definition at line 100 of file itkTransformToDeterminantOfSpatialJacobianSource.h.


Constructor & Destructor Documentation

template<class TOutputImage , class TTransformPrecisionType = double>
itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::TransformToDeterminantOfSpatialJacobianSource ( ) [protected]
template<class TOutputImage , class TTransformPrecisionType = double>
itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::~TransformToDeterminantOfSpatialJacobianSource ( ) [inline, protected]
template<class TOutputImage , class TTransformPrecisionType = double>
itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::TransformToDeterminantOfSpatialJacobianSource ( const Self ) [private]

Member Function Documentation

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::BeforeThreadedGenerateData ( void  ) [virtual]

Checking if transform is set. In case of linear transformations, the LinearGenerateData is called.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GenerateOutputInformation ( void  ) [virtual]

TransformToDeterminantOfSpatialJacobianSource produces a floating value image.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const char* itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetClassName ( ) const [virtual]

Run-time type information (and related methods).

template<class TOutputImage , class TTransformPrecisionType = double>
unsigned long itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetMTime ( void  ) const

Compute the Modified Time based on changes to the components.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const DirectionType& itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputDirection ( ) [virtual]
template<class TOutputImage , class TTransformPrecisionType = double>
virtual const IndexType& itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputIndex ( ) [virtual]

Get the start index of the output largest possible region.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const OriginType& itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputOrigin ( ) [virtual]

Get the output image origin.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const OutputImageRegionType& itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputRegion ( ) [virtual]

Get the region of the output image.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const SizeType& itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputSize ( ) [virtual]

Get the size of the output image.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const SpacingType& itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputSpacing ( ) [virtual]

Get the output image spacing.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const TransformType* itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetTransform ( ) [virtual]

Get a pointer to the coordinate transform.

template<class TOutputImage , class TTransformPrecisionType = double>
itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::itkStaticConstMacro ( ImageDimension  ,
unsigned  int,
TOutputImage::ImageDimension   
)

Number of dimensions.

template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::LinearGenerateData ( void  ) [protected]

Faster implementation for resampling that works for with linear transformation types. Unthreaded.

template<class TOutputImage , class TTransformPrecisionType = double>
static Pointer itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::New ( ) [static]

Method for creation through the object factory.

template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::NonlinearThreadedGenerateData ( const OutputImageRegionType outputRegionForThread,
int  threadId 
) [protected]

Default implementation for resampling that works for any transformation type.

template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::operator= ( const Self ) [private]
template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const [protected]
template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputDirection ( DirectionType  _arg) [virtual]

Set the output direction cosine matrix.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputIndex ( const IndexType index) [virtual]

Set the start index of the output largest possible region. The default is an index of all zeros.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputOrigin ( const double values) [virtual]
template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputOrigin ( OriginType  _arg) [virtual]

Set the output image origin.

template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputParametersFromImage ( const ImageBaseType image)

Helper method to set the output parameters based on this image

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputRegion ( OutputImageRegionType  _arg) [virtual]

Set the region of the output image.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputSize ( const SizeType size) [virtual]

Set the size of the output image.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputSpacing ( SpacingType  _arg) [virtual]

Set the output image spacing.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputSpacing ( const double values) [virtual]
template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetTransform ( const TransformType _arg) [virtual]

Set the coordinate transformation. Set the coordinate transform to use for resampling. Note that this must be in physical coordinates and it is the output-to-input transform, NOT the input-to-output transform that you might naively expect. By default the filter uses an Identity transform. You must provide a different transform here, before attempting to run the filter, if you do not want to use the default Identity transform.

template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::ThreadedGenerateData ( const OutputImageRegionType outputRegionForThread,
int  threadId 
) [protected]

TransformToDeterminantOfSpatialJacobianSource can be implemented as a multithreaded filter.


Field Documentation

template<class TOutputImage , class TTransformPrecisionType = double>
DirectionType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::m_OutputDirection [private]
template<class TOutputImage , class TTransformPrecisionType = double>
OriginType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::m_OutputOrigin [private]
template<class TOutputImage , class TTransformPrecisionType = double>
RegionType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::m_OutputRegion [private]

Member variables.

Definition at line 210 of file itkTransformToDeterminantOfSpatialJacobianSource.h.

template<class TOutputImage , class TTransformPrecisionType = double>
SpacingType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::m_OutputSpacing [private]
template<class TOutputImage , class TTransformPrecisionType = double>
TransformPointerType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::m_Transform [private]


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