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#include <elxSimilarityTransform.h>
A transform based on the itk SimilarityTransforms.
This transform is a rigid body transformation, with an isotropic scaling. In 2D, the order of parameters is:
[scale, rotation angle, translationx, translationy]
In 3D, the order of parameters is:
[versor1 versor2 versor3 translationx translationy translationz scale]
Make sure, when specifying the Scales manually that you keep in mind this order!
The parameters used in this class are:
(Transform "SimilarityTransform")
(Scales 100000.0 60000.0 ... 80000.0)
( AutomaticScalesEstimation "true" )
(CenterOfRotation 128 128 90)
(AutomaticTransformInitialization "true")
(AutomaticTransformInitializationMethod "CenterOfGravity")
The transform parameters necessary for transformix, additionally defined by this class, are:
(CenterOfRotation 128 128 90)
(CenterOfRotationPoint 10.555 6.666 12.345)
Definition at line 77 of file elxSimilarityTransform.h.
typedef Superclass2::CombinationTransformType elastix::SimilarityTransformElastix< TElastix >::CombinationTransformType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 146 of file elxSimilarityTransform.h.
typedef Superclass2::ConfigurationPointer elastix::SimilarityTransformElastix< TElastix >::ConfigurationPointer |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 139 of file elxSimilarityTransform.h.
typedef Superclass2::ConfigurationType elastix::SimilarityTransformElastix< TElastix >::ConfigurationType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 138 of file elxSimilarityTransform.h.
typedef SmartPointer<const Self> elastix::SimilarityTransformElastix< TElastix >::ConstPointer |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 92 of file elxSimilarityTransform.h.
typedef Superclass2::CoordRepType elastix::SimilarityTransformElastix< TElastix >::CoordRepType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 142 of file elxSimilarityTransform.h.
typedef FixedImageType::DirectionType elastix::SimilarityTransformElastix< TElastix >::DirectionType |
Definition at line 155 of file elxSimilarityTransform.h.
typedef Superclass2::ElastixPointer elastix::SimilarityTransformElastix< TElastix >::ElastixPointer |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 137 of file elxSimilarityTransform.h.
typedef Superclass2::ElastixType elastix::SimilarityTransformElastix< TElastix >::ElastixType |
Typedef's inherited from TransformBase.
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 136 of file elxSimilarityTransform.h.
typedef Superclass2::FixedImageType elastix::SimilarityTransformElastix< TElastix >::FixedImageType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 143 of file elxSimilarityTransform.h.
typedef FixedImageType::IndexType elastix::SimilarityTransformElastix< TElastix >::IndexType |
Other typedef's.
Definition at line 149 of file elxSimilarityTransform.h.
typedef IndexType::IndexValueType elastix::SimilarityTransformElastix< TElastix >::IndexValueType |
Definition at line 150 of file elxSimilarityTransform.h.
typedef Superclass1::InputCovariantVectorType elastix::SimilarityTransformElastix< TElastix >::InputCovariantVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 126 of file elxSimilarityTransform.h.
typedef Superclass1::InputPointType elastix::SimilarityTransformElastix< TElastix >::InputPointType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 122 of file elxSimilarityTransform.h.
typedef Superclass1::InputVectorType elastix::SimilarityTransformElastix< TElastix >::InputVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 124 of file elxSimilarityTransform.h.
typedef Superclass1::InputVnlVectorType elastix::SimilarityTransformElastix< TElastix >::InputVnlVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 128 of file elxSimilarityTransform.h.
typedef Superclass2::ITKBaseType elastix::SimilarityTransformElastix< TElastix >::ITKBaseType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 145 of file elxSimilarityTransform.h.
typedef Superclass1::JacobianType elastix::SimilarityTransformElastix< TElastix >::JacobianType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 120 of file elxSimilarityTransform.h.
typedef Superclass2::MovingImageType elastix::SimilarityTransformElastix< TElastix >::MovingImageType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 144 of file elxSimilarityTransform.h.
typedef SimilarityTransformType::OffsetType elastix::SimilarityTransformElastix< TElastix >::OffsetType |
Definition at line 133 of file elxSimilarityTransform.h.
typedef Superclass1::OutputCovariantVectorType elastix::SimilarityTransformElastix< TElastix >::OutputCovariantVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 127 of file elxSimilarityTransform.h.
typedef Superclass1::OutputPointType elastix::SimilarityTransformElastix< TElastix >::OutputPointType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 123 of file elxSimilarityTransform.h.
typedef Superclass1::OutputVectorType elastix::SimilarityTransformElastix< TElastix >::OutputVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 125 of file elxSimilarityTransform.h.
typedef Superclass1::OutputVnlVectorType elastix::SimilarityTransformElastix< TElastix >::OutputVnlVectorType |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 129 of file elxSimilarityTransform.h.
typedef Superclass1::ParametersType elastix::SimilarityTransformElastix< TElastix >::ParametersType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 119 of file elxSimilarityTransform.h.
typedef SmartPointer<Self> elastix::SimilarityTransformElastix< TElastix >::Pointer |
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 91 of file elxSimilarityTransform.h.
typedef FixedImageType::PointType elastix::SimilarityTransformElastix< TElastix >::PointType |
Definition at line 152 of file elxSimilarityTransform.h.
typedef FixedImageType::RegionType elastix::SimilarityTransformElastix< TElastix >::RegionType |
Definition at line 154 of file elxSimilarityTransform.h.
typedef Superclass2::RegistrationPointer elastix::SimilarityTransformElastix< TElastix >::RegistrationPointer |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 141 of file elxSimilarityTransform.h.
typedef Superclass2::RegistrationType elastix::SimilarityTransformElastix< TElastix >::RegistrationType |
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 140 of file elxSimilarityTransform.h.
typedef Superclass1::ScalarType elastix::SimilarityTransformElastix< TElastix >::ScalarType |
Typedefs inherited from the superclass. These are both in Similarity2D and Similarity3D.
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
Definition at line 118 of file elxSimilarityTransform.h.
typedef Superclass2::ScalesType elastix::SimilarityTransformElastix< TElastix >::ScalesType |
For scales setting in the optimizer
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 162 of file elxSimilarityTransform.h.
typedef SimilarityTransformElastix elastix::SimilarityTransformElastix< TElastix >::Self |
Standard ITK-stuff.
Reimplemented from elastix::TransformBase< TElastix >.
Definition at line 86 of file elxSimilarityTransform.h.
typedef SimilarityTransformType::Pointer elastix::SimilarityTransformElastix< TElastix >::SimilarityTransformPointer |
NOTE: use this one only in 3D (otherwise it's just an int).
Definition at line 132 of file elxSimilarityTransform.h.
typedef SimilarityTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > elastix::SimilarityTransformElastix< TElastix >::SimilarityTransformType |
The ITK-class that provides most of the functionality, and that is set as the "CurrentTransform" in the CombinationTransform
Definition at line 98 of file elxSimilarityTransform.h.
typedef FixedImageType::SizeType elastix::SimilarityTransformElastix< TElastix >::SizeType |
Definition at line 151 of file elxSimilarityTransform.h.
typedef FixedImageType::SpacingType elastix::SimilarityTransformElastix< TElastix >::SpacingType |
Definition at line 153 of file elxSimilarityTransform.h.
typedef AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > elastix::SimilarityTransformElastix< TElastix >::Superclass1 |
Definition at line 89 of file elxSimilarityTransform.h.
typedef elx::TransformBase< TElastix > elastix::SimilarityTransformElastix< TElastix >::Superclass2 |
Definition at line 90 of file elxSimilarityTransform.h.
typedef TransformInitializerType::Pointer elastix::SimilarityTransformElastix< TElastix >::TransformInitializerPointer |
Definition at line 159 of file elxSimilarityTransform.h.
typedef CenteredTransformInitializer< SimilarityTransformType, FixedImageType, MovingImageType> elastix::SimilarityTransformElastix< TElastix >::TransformInitializerType |
Definition at line 158 of file elxSimilarityTransform.h.
elastix::SimilarityTransformElastix< TElastix >::SimilarityTransformElastix | ( | ) | [protected] |
The constructor.
virtual elastix::SimilarityTransformElastix< TElastix >::~SimilarityTransformElastix | ( | ) | [inline, protected, virtual] |
The destructor.
Definition at line 212 of file elxSimilarityTransform.h.
elastix::SimilarityTransformElastix< TElastix >::SimilarityTransformElastix | ( | const Self & | ) | [private] |
The private constructor.
virtual void elastix::SimilarityTransformElastix< TElastix >::BeforeRegistration | ( | void | ) | [virtual] |
Execute stuff before the actual registration:
Reimplemented from elastix::BaseComponent.
elastix::SimilarityTransformElastix< TElastix >::elxClassNameMacro | ( | "SimilarityTransform" | ) |
Name of this class. Use this name in the parameter file to select this specific transform.
example: (Transform "SimilarityTransform")
virtual const char* elastix::SimilarityTransformElastix< TElastix >::GetClassName | ( | ) | const [virtual] |
Run-time type information (and related methods).
Reimplemented from elastix::TransformBase< TElastix >.
virtual void elastix::SimilarityTransformElastix< TElastix >::InitializeTransform | ( | void | ) | [virtual] |
Initialize Transform.
It is not yet possible to enter an initial rotation angle.
elastix::SimilarityTransformElastix< TElastix >::itkStaticConstMacro | ( | SpaceDimension | , |
unsigned | int, | ||
Superclass2::FixedImageDimension | |||
) |
Dimension of the fixed image.
static Pointer elastix::SimilarityTransformElastix< TElastix >::New | ( | ) | [static] |
Method for creation through the object factory.
Reimplemented from itk::AdvancedCombinationTransform< elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension >.
void elastix::SimilarityTransformElastix< TElastix >::operator= | ( | const Self & | ) | [private] |
The private copy constructor.
virtual bool elastix::SimilarityTransformElastix< TElastix >::ReadCenterOfRotationIndex | ( | InputPointType & | rotationPoint | ) | const [protected, virtual] |
Try to read the CenterOfRotation from the transform parameter file This is an index value, and, thus, converted to world coordinates. Transform parameter files generated by elastix version < 3.402 saved the center of rotation in this way.
virtual bool elastix::SimilarityTransformElastix< TElastix >::ReadCenterOfRotationPoint | ( | InputPointType & | rotationPoint | ) | const [protected, virtual] |
Try to read the CenterOfRotationPoint from the transform parameter file The CenterOfRotationPoint is already in world coordinates. Transform parameter files generated by elastix version > 3.402 save the center of rotation in this way.
virtual void elastix::SimilarityTransformElastix< TElastix >::ReadFromFile | ( | void | ) | [virtual] |
Function to read transform-parameters from a file.
It reads the center of rotation and calls the superclass' implementation.
Reimplemented from elastix::TransformBase< TElastix >.
virtual void elastix::SimilarityTransformElastix< TElastix >::SetScales | ( | void | ) | [virtual] |
Set the scales
virtual void elastix::SimilarityTransformElastix< TElastix >::WriteToFile | ( | const ParametersType & | param | ) | const [virtual] |
Function to write transform-parameters to a file. It writes the center of rotation to file and calls the superclass' implementation.
Reimplemented from elastix::TransformBase< TElastix >.
SimilarityTransformPointer elastix::SimilarityTransformElastix< TElastix >::m_SimilarityTransform [private] |
Definition at line 235 of file elxSimilarityTransform.h.
Generated on 24-05-2012 for elastix by ![]() |
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