librostlab-blast
1.0.0
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Classes | |
class | parser_error |
class | parser_driver |
Blast (default, -m 0) output parser. More... | |
class | location |
Abstract a location. More... | |
class | parser |
A Bison parser. More... | |
class | position |
Abstract a position. More... | |
class | stack |
class | slice |
Present a slice of the top of a stack. More... | |
struct | round |
Data specific to an iterated blast round. More... | |
struct | hsp |
High-scoring segment pair. More... | |
struct | hit |
Blast hit. More... | |
struct | oneline |
One-line description. More... | |
struct | result |
Blast result for one query. More... | |
Functions | |
const location | operator+ (const location &begin, const location &end) |
Join two location objects to create a location. | |
const location | operator+ (const location &begin, unsigned int width) |
Add two location objects. | |
location & | operator+= (location &res, unsigned int width) |
Add and assign a location. | |
bool | operator== (const location &loc1, const location &loc2) |
Compare two location objects. | |
bool | operator!= (const location &loc1, const location &loc2) |
Compare two location objects. | |
std::ostream & | operator<< (std::ostream &ostr, const location &loc) |
Intercept output stream redirection. | |
const position & | operator+= (position &res, const int width) |
Add and assign a position. | |
const position | operator+ (const position &begin, const int width) |
Add two position objects. | |
const position & | operator-= (position &res, const int width) |
Add and assign a position. | |
const position | operator- (const position &begin, const int width) |
Add two position objects. | |
bool | operator== (const position &pos1, const position &pos2) |
Compare two position objects. | |
bool | operator!= (const position &pos1, const position &pos2) |
Compare two position objects. | |
std::ostream & | operator<< (std::ostream &ostr, const position &pos) |
Intercept output stream redirection. |
bool rostlab::blast::operator!= | ( | const location & | loc1, |
const location & | loc2 | ||
) | [inline] |
Compare two location objects.
Definition at line 135 of file blast-parser-location.h.
bool rostlab::blast::operator!= | ( | const position & | pos1, |
const position & | pos2 | ||
) | [inline] |
Compare two position objects.
Definition at line 141 of file blast-parser-position.h.
const location rostlab::blast::operator+ | ( | const location & | begin, |
const location & | end | ||
) | [inline] |
Join two location objects to create a location.
Definition at line 104 of file blast-parser-location.h.
const position rostlab::blast::operator+ | ( | const position & | begin, |
const int | width | ||
) | [inline] |
Add two position objects.
Definition at line 109 of file blast-parser-position.h.
const location rostlab::blast::operator+ | ( | const location & | begin, |
unsigned int | width | ||
) | [inline] |
Add two location objects.
Definition at line 112 of file blast-parser-location.h.
const position& rostlab::blast::operator+= | ( | position & | res, |
const int | width | ||
) | [inline] |
Add and assign a position.
Definition at line 101 of file blast-parser-position.h.
location& rostlab::blast::operator+= | ( | location & | res, |
unsigned int | width | ||
) | [inline] |
Add and assign a location.
Definition at line 120 of file blast-parser-location.h.
const position rostlab::blast::operator- | ( | const position & | begin, |
const int | width | ||
) | [inline] |
Add two position objects.
Definition at line 124 of file blast-parser-position.h.
const position& rostlab::blast::operator-= | ( | position & | res, |
const int | width | ||
) | [inline] |
Add and assign a position.
Definition at line 117 of file blast-parser-position.h.
std::ostream& rostlab::blast::operator<< | ( | std::ostream & | ostr, |
const location & | loc | ||
) | [inline] |
Intercept output stream redirection.
ostr | the destination output stream |
loc | a reference to the location to redirect |
Avoid duplicate information.
Definition at line 146 of file blast-parser-location.h.
std::ostream& rostlab::blast::operator<< | ( | std::ostream & | ostr, |
const position & | pos | ||
) | [inline] |
Intercept output stream redirection.
ostr | the destination output stream |
pos | a reference to the position to redirect |
Definition at line 151 of file blast-parser-position.h.
bool rostlab::blast::operator== | ( | const location & | loc1, |
const location & | loc2 | ||
) | [inline] |
Compare two location objects.
Definition at line 128 of file blast-parser-location.h.
bool rostlab::blast::operator== | ( | const position & | pos1, |
const position & | pos2 | ||
) | [inline] |
Compare two position objects.
Definition at line 131 of file blast-parser-position.h.