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ConsensusMapNormalizer

Normalization of intensities in a set of maps using robust regression.

potential predecessor tools $ \longrightarrow $ ConsensusMapNormalizer $ \longrightarrow $ potential successor tools
FeatureLinkerUnlabeled
(or another feature grouping tool)
ProteinQuantifier
TextExporter

The tool normalizes the intensities of a set of maps (consensusXML file) using robust regression. Maps are normalized pair-wise relative to the map with the most features. Given two maps, peptide featues are classified as non-outliers (ratio_threshold < intensity ratio < 1/ratio_threshold) or outliers. From the non-outliers an average intensity ratio is calculated and used for normalization.

The command line parameters of this tool are:

 

OpenMS / TOPP release 1.9.0 Documentation generated on Tue May 28 2013 12:41:58 using doxygen 1.8.3.1