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FalseDiscoveryRate

Tool to estimate the false discovery rate on peptide and protein level

pot. predecessor tools $ \longrightarrow $ FalseDiscoveryRate $ \longrightarrow $ pot. successor tools
MascotAdapter (or other ID engines) IDFilter
PeptideIndexer

This TOPP tool can calculate the false discovery rate (FDR) given a forward and backward search. Most useful is this on protein level, however, it also can be applied to peptides.

The false discovery rate is defined as the number of false discoveries (the hits in the reversed search) over the number of false and correct discoveries (the hits in both databases) given a score.

Prerequisites:

The command line parameters of this tool are:

 

OpenMS / TOPP release 1.9.0 Documentation generated on Tue May 28 2013 12:41:58 using doxygen 1.8.3.1