Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Macros Groups Pages
PTPredict

This application is used to predict the likelihood of peptides to be proteotypic.

This method has been described in the publication

Ole Schulz-Trieglaff, Nico Pfeifer, Clemens Gröpl, Oliver Kohlbacher and Knut Reinert LC-MSsim - a simulation software for Liquid ChromatographyMass Spectrometry data BMC Bioinformatics 2008, 9:423.

The input of this application is an svm model and an IdXML file with peptide identifications. The svm model file is specified by the svm_model parameter in the command line or the ini file. This file should have been produced by the PTModel application.

The command line parameters of this tool are:

 

OpenMS / TOPP release 1.9.0 Documentation generated on Tue May 28 2013 12:41:58 using doxygen 1.8.3.1