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IDFileConverter

Converts identification engine file formats.

potential predecessor tools $ \longrightarrow $ IDFileConverter $ \longrightarrow $ potential successor tools
TPP tools: PeptideProphet, ProteinProphet TPP tools: ProteinProphet
(for conversion from idXML to pepXML)
Sequest protein identification engine

Conversion from the TPP file formats pepXML and protXML to OpenMS' idXML is quite comprehensive, to the extent that the original data can be represented in the simpler idXML format.

In contrast, support for converting from idXML to pepXML is limited. The purpose here is simply to create pepXML files containing the relevant information for the use of ProteinProphet.

Some information about the supported input types: MzIdentML PepXML ProtXML idXML

The command line parameters of this tool are:

 

OpenMS / TOPP release 1.9.0 Documentation generated on Tue May 28 2013 12:41:58 using doxygen 1.8.3.1