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IDMerger

Merges several idXML files into one idXML file.

potential predecessor tools $ \longrightarrow $ IDMerger $ \longrightarrow $ potential successor tools
MascotAdapter (or other ID engines) ConsensusID
IDFileConverter IDMapper

The peptide hits and protein hits of the input files will be written into the single output file. In general, the number of idXML files that can be merged into one file is not limited.

The combination of search engine and processing date/time should be unique for every identification run over all input files. If this is not the case, the date/time of a conflicting run will be increased in steps of seconds until the combination is unique.

With the pepxml_protxml option, results from corresponding PeptideProphet and ProteinProphet runs can be combined. In this case, exactly two idXML files are expected as input: one containing data from a pepXML file, and the other containing data from a protXML file that was created based on the pepXML (meaningful results can only be obtained for matching files!). pepXML or protXML can be converted to idXML with the IDFileConverter tool.

The command line parameters of this tool are:

 

OpenMS / TOPP release 1.9.0 Documentation generated on Tue May 28 2013 12:41:58 using doxygen 1.8.3.1