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MapAlignmentEvaluation

Evaluates alignment results against a ground truth.

pot. predecessor tools $ \longrightarrow $ MapAlignmentEvaluationAlgorithm $ \longrightarrow $ pot. successor tools
FeatureLinkerUnlabeled or
FeatureLinkerUnlabeledQT
none (text output)

This tool implements the evaluation measures published in
"Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements",
Eva Lange, Ralf Tautenhahn, Steffen Neumann, Clemens Groepl. BMC Bioinformatics 2008, 9:375.
doi:10.1186/1471-2105-9-375.

Input is a ground truth file as described on the CAAP web page
Output is a recall- or a precision-value.

The command line parameters of this tool are:

 

OpenMS / TOPP release 1.9.0 Documentation generated on Sun Oct 27 2013 01:11:37 using doxygen 1.8.4