Besides TOPP, OpenMS offers a range of other tools. They are not included in TOPP as they are not part of typical analysis pipelines, but they still might be very helpful to you.
Just as the TOPP tools, they can be found to the OpenMS/bin folder.
The UTILS tools are divided into several subgroups:
Maintenance
- INIUpdater - Update INI and TOPPAS files from previous versions of OpenMS as parameters and storage method might have changed
File handling
- FuzzyDiff - Compares two files, tolerating numeric differences.
- XMLValidator - Validates XML files against an XSD schema.
- SemanticValidator - SemanticValidator for analysisXML and mzML files.
- CVInspector - A tool for visualization and validation of PSI mapping and CV files.
- IDSplitter - Splits protein/peptide identifications off of annotated data files.
Algorithm evaluation
- FFEval - Evaluation tool for feature detection algorithms.
- LabeledEval - Evaluation tool for isotope-labeled quantitation experiments.
- MapAlignmentEvaluation - Evaluates alignment results against a ground truth.
- IdXMLEvaluation - Application that evaluates tps, tns, fps, and fns for an IdXML file with predicted RTs.
- TransformationEvaluation - Simple evaluation of transformations (e.g. RT transformations produced by a MapAligner tool).
Peptide identification
Misc