HistogramWordStringKernel.h

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00001 /*
00002  * This program is free software; you can redistribute it and/or modify
00003  * it under the terms of the GNU General Public License as published by
00004  * the Free Software Foundation; either version 3 of the License, or
00005  * (at your option) any later version.
00006  *
00007  * Written (W) 1999-2009 Soeren Sonnenburg
00008  * Written (W) 1999-2008 Gunnar Raetsch
00009  * Copyright (C) 1999-2009 Fraunhofer Institute FIRST and Max-Planck-Society
00010  */
00011 
00012 #ifndef _HISTOGRAMWORDKERNEL_H___
00013 #define _HISTOGRAMWORDKERNEL_H___
00014 
00015 #include "lib/common.h"
00016 #include "kernel/StringKernel.h"
00017 #include "classifier/PluginEstimate.h"
00018 #include "features/StringFeatures.h"
00019 
00020 namespace shogun
00021 {
00022     class CPluginEstimate;
00023     template <class T> class CStringFeatures;
00026 class CHistogramWordStringKernel: public CStringKernel<uint16_t>
00027 {
00028     public:
00034         CHistogramWordStringKernel(int32_t size, CPluginEstimate* pie);
00035 
00042         CHistogramWordStringKernel(
00043             CStringFeatures<uint16_t>* l, CStringFeatures<uint16_t>* r,
00044             CPluginEstimate* pie);
00045 
00046         virtual ~CHistogramWordStringKernel();
00047 
00054         virtual bool init(CFeatures* l, CFeatures* r);
00055 
00057         virtual void cleanup();
00058 
00063         virtual EKernelType get_kernel_type() { return K_HISTOGRAM; }
00064 
00069         virtual const char* get_name() const { return "Histogram" ; }
00070 
00071     protected:
00080         float64_t compute(int32_t idx_a, int32_t idx_b);
00081 
00088         inline int32_t compute_index(int32_t position, uint16_t symbol)
00089         {
00090             return position*num_symbols+symbol+1;
00091         }
00092 
00093     protected:
00095         CPluginEstimate* estimate;
00096 
00098         float64_t* mean;
00100         float64_t* variance;
00101 
00103         float64_t* sqrtdiag_lhs;
00105         float64_t* sqrtdiag_rhs;
00106 
00108         float64_t* ld_mean_lhs;
00110         float64_t* ld_mean_rhs;
00111 
00113         float64_t* plo_lhs;
00115         float64_t* plo_rhs;
00116 
00118         int32_t num_params;
00120         int32_t num_params2;
00122         int32_t num_symbols;
00124         float64_t sum_m2_s2;
00125 
00127         bool initialized;
00128 };
00129 }
00130 #endif /* _HISTOGRAMWORDKERNEL_H__ */

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