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CSpectrumRBFKernel Member List

This is the complete list of members for CSpectrumRBFKernel, including all inherited members.

AA_helper(const char *path, const int degree, const char *joint_seq, unsigned int index)CSpectrumRBFKernelprotected
AA_matrixCSpectrumRBFKernelprotected
AA_matrix_lengthCSpectrumRBFKernelprotected
add_to_normal(int32_t vector_idx, float64_t weight)CKernelvirtual
alphabetCSpectrumRBFKernelprotected
cache_sizeCKernelprotected
CKernel()CKernel
CKernel(int32_t size)CKernel
CKernel(CFeatures *l, CFeatures *r, int32_t size)CKernel
cleanup()CSpectrumRBFKernelvirtual
clear_normal()CKernelvirtual
combined_kernel_weightCKernelprotected
compute(int32_t idx_a, int32_t idx_b)CSpectrumRBFKernelprotectedvirtual
compute_batch(int32_t num_vec, int32_t *vec_idx, float64_t *target, int32_t num_suppvec, int32_t *IDX, float64_t *alphas, float64_t factor=1.0)CKernelvirtual
compute_by_subkernel(int32_t vector_idx, float64_t *subkernel_contrib)CKernelvirtual
compute_optimized(int32_t vector_idx)CKernelvirtual
compute_row_start(int64_t offs, int32_t n, bool symmetric)CKernelprotected
CSGObject()CSGObject
CSGObject(const CSGObject &orig)CSGObject
CSpectrumRBFKernel()CSpectrumRBFKernel
CSpectrumRBFKernel(int32_t size, float64_t *AA_matrix, int32_t degree, float64_t width)CSpectrumRBFKernel
CSpectrumRBFKernel(CStringFeatures< char > *l, CStringFeatures< char > *r, int32_t size, float64_t *AA_matrix, int32_t degree, float64_t width)CSpectrumRBFKernel
CStringKernel(int32_t cachesize=0)CStringKernel< char >
CStringKernel(CFeatures *l, CFeatures *r)CStringKernel< char >
degreeCSpectrumRBFKernelprotected
delete_optimization()CKernelvirtual
get_cache_size()CKernel
get_combined_kernel_weight()CKernel
get_degree() const CSpectrumRBFKernel
get_degree()CSpectrumRBFKernel
get_feature_class()CStringKernel< char >virtual
get_feature_type()CStringKernel< char >virtual
get_global_io()CSGObject
get_global_parallel()CSGObject
get_global_version()CSGObject
get_is_initialized()CKernel
get_kernel_col(int32_t j)CKernelvirtual
get_kernel_matrix()CKernel
get_kernel_matrix()CKernel
get_kernel_matrix_helper(void *p)CKernelprotectedstatic
get_kernel_row(int32_t i)CKernelvirtual
get_kernel_type()CSpectrumRBFKernelvirtual
get_lhs()CKernel
get_lhs_equals_rhs()CKernel
get_modelsel_names()CSGObject
get_modsel_param_descr(const char *param_name)CSGObject
get_modsel_param_index(const char *param_name)CSGObject
get_name() const CSpectrumRBFKernelvirtual
get_normalizer()CKernelvirtual
get_num_subkernels()CKernelvirtual
get_num_vec_lhs()CKernelvirtual
get_num_vec_rhs()CKernelvirtual
get_optimization_type()CKernel
get_rhs()CKernel
get_subkernel_weights(int32_t &num_weights)CKernelvirtual
has_features()CKernelvirtual
has_property(EKernelProperty p)CKernel
init(CFeatures *l, CFeatures *r)CSpectrumRBFKernelvirtual
init_normalizer()CKernelvirtual
init_optimization(int32_t count, int32_t *IDX, float64_t *weights)CKernelvirtual
init_optimization_svm(CSVM *svm)CKernel
initializedCSpectrumRBFKernelprotected
ioCSGObject
is_generic(EPrimitiveType *generic) const CSGObjectvirtual
kernel(int32_t idx_a, int32_t idx_b)CKernel
kernel_matrixCSpectrumRBFKernelprotected
lhsCKernelprotected
lhs_equals_rhsCKernelprotected
list_kernel()CKernel
load(CFile *loader)CKernel
load_serializable(CSerializableFile *file, const char *prefix="")CSGObjectvirtual
load_serializable_post()CKernelprotectedvirtual
load_serializable_pre()CSGObjectprotectedvirtual
m_model_selection_parametersCSGObject
m_parametersCSGObject
max_mismatchCSpectrumRBFKernelprotected
max_sequence_lengthCSpectrumRBFKernelprotected
nof_sequencesCSpectrumRBFKernelprotected
normalizerCKernelprotected
num_lhsCKernelprotected
num_rhsCKernelprotected
opt_typeCKernelprotected
optimization_initializedCKernelprotected
parallelCSGObject
print_serializable(const char *prefix="")CSGObjectvirtual
profilesCSpectrumRBFKernelprotected
propertiesCKernelprotected
read_profiles_and_sequences()CSpectrumRBFKernelprotected
register_alphabet()CSpectrumRBFKernelprotected
register_param()CSpectrumRBFKernelprotectedvirtual
register_params()CKernelprotectedvirtual
remove_lhs()CSpectrumRBFKernelprotectedvirtual
remove_lhs_and_rhs()CKernelvirtual
remove_rhs()CKernelvirtual
rhsCKernelprotected
save(CFile *writer)CKernel
save_serializable(CSerializableFile *file, const char *prefix="")CSGObjectvirtual
save_serializable_post()CKernelprotectedvirtual
save_serializable_pre()CKernelprotectedvirtual
sequence_labelsCSpectrumRBFKernelprotected
sequencesCSpectrumRBFKernelprotected
set_AA_matrix(float64_t *AA_matrix_)CSpectrumRBFKernel
set_cache_size(int32_t size)CKernel
set_combined_kernel_weight(float64_t nw)CKernel
set_degree(int32_t deg)CSpectrumRBFKernel
set_generic()CSGObject
set_global_io(SGIO *io)CSGObject
set_global_parallel(Parallel *parallel)CSGObject
set_global_version(Version *version)CSGObject
set_is_initialized(bool p_init)CKernelprotected
set_normalizer(CKernelNormalizer *normalizer)CKernelvirtual
set_optimization_type(EOptimizationType t)CKernelvirtual
set_property(EKernelProperty p)CKernelprotected
set_subkernel_weights(SGVector< float64_t > weights)CKernelvirtual
string_featuresCSpectrumRBFKernelprotected
target_letter_0CSpectrumRBFKernelprotected
unset_generic()CSGObject
unset_property(EKernelProperty p)CKernelprotected
versionCSGObject
widthCSpectrumRBFKernelprotected
~CKernel()CKernelvirtual
~CSGObject()CSGObjectvirtual
~CSpectrumRBFKernel()CSpectrumRBFKernelvirtual

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