running workflows with updatehash=True option NOTE: THIS IS THE DEFAULT CONFIG NOW, so unless you updatehash, workflows will rerun
Functions used in connect string must be pickleable
API: SPM EstimateContrast: ignore_derivs replaced by use_derivs
API: All interfaces: added new config option ignore_exception
cutoff is mandatory (even if its set to np.inf). Additional interfaces SpecifySPMModel and SpecifySparseModel support other types of data.
API: fsl.DTIFit input “save” is now called “save_tensor”
this off by specifying mandatory_inputs=False to the constructor.
API: fsl FILMGLS input “autocorr_estimate” is now called “autocorr_estimate_only”
the result directory)
inputs – subject_id, hemi, and surf_geo
ENH: All commandline interfaces display stdout and stderr
ENH: All interfaces raise exceptions on error with an option to suppress
IPython, SGE, PBS)
ENH: MapNode runs in parallel under IPython, SGE, MultiProc, PBS
ENH: Optionally allows keeping only required outputs
using python string-formatting with inputs or regular expressions matching
ENH: New interface: freesurfer.ApplyMask (mri_mask)
ENH: New FSL interface – SwapDimensions (fslswapdim)
ENH: Sparse models allow regressor scaling and temporal derivatives
and DistanceMap)
ENH: dcm2nii interface exposes bvals, bvecs, reoriented and cropped images
ENH: added support for networx 1.4 and improved iterable expansion
ENH: Replaced BEDPOSTX and EddyCurrent with nipype pipelines
ENH: Ability to create a hierarchical dot file
ENH: Improved debugging information for rerunning nodes
ENH: Added ‘stop_on_first_rerun’ option
ENH: Added support for Camino
ENH: Added support for Camino2Trackvis
ENH: Added support for Connectome Viewer
BF: dcm2nii interface handles gzipped files correctly
BF: FNIRT generates proper outputs
BF: fsl.DTIFit now properly collects tensor volume
BF: updatehash now removes old result hash file
API: hash values for float use a string conversion up to the 10th decimal place.
API: Iterables in output path will always be generated as _var1_val1_var2_val2 pairs
ENH: Added support to nipy: GLM fit, contrast estimation and calculating mask from EPI
ENH: Added support for flash processing using FreeSurfer
ENH: Added support for flirt matrix in BBRegister
ENH: Added support for FSL convert_xfm
ENH: hashes can be updated again without rerunning all nodes.
ENH: Added multiple regression design for FSL
ENH: Added SPM based Analyze to Nifti converter
ENH: Added increased support for PyXNAT
ENH: Added support for MCR-based binary version of SPM
ENH: Added SPM node for calculating various threshold statistics
ENH: Added distance and dissimilarity measurements
BF: Diffusion toolkit gets installed
on all options specific to different subsampling levels
- all outputs from nodes are now pickled as part of workflow processing
- added git developer docs